RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 AKIRIN1Q9H9L7 192 aaPredicted RBP21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 SYTL2Q9HCH5 934 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 CHRAC1Q9NRG0 131 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 ICKQ9UPZ9 632 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 ASF1AQ9Y294 204 aa21.05■□□□□ 0.96
CCDC28B-201ENST00000373602 C2orf74A8MZ97 194 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 BHMG1C9JSJ3 638 aaPredicted RBP21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 CEP104O60308 925 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 CPNE3O75131 537 aaKnown RBP21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 SCRG1O75711 98 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 RECKO95980 971 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 PPARGP37231 505 aaPredicted RBP21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 KCNJ1P48048 391 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 BASP1P80723 227 aaKnown RBP21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 NFKB2Q00653 900 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 SYTL3Q4VX76 610 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 NAPRTQ6XQN6 538 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 GSTA5Q7RTV2 222 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 PRICKLE2Q7Z3G6 844 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 TMEM126BQ8IUX1 230 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 TBC1D21Q8IYX1 336 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 FANCEQ9HB96 536 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 ACTR10Q9NZ32 417 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 PPP2R2CQ9Y2T4 447 aa21.04■□□□□ 0.96
CCDC28B-201ENST00000373602 TLN1Q9Y490 2541 aaKnown RBP21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 CREG1O75629 220 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 MSL3P1P0C860 447 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 ST6GAL1P15907 406 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 SESN2P58004 480 aaPredicted RBP21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 ERV3-1Q14264 604 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 AARS2Q5JTZ9 985 aaKnown RBP21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 TRAPPC9Q96Q05 1148 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 CARD6Q9BX69 1037 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 IL22Q9GZX6 179 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 HOMER3Q9NSC5 361 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 TREX1Q9NSU2 369 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 POLG2Q9UHN1 485 aa21.03■□□□□ 0.96
CCDC28B-201ENST00000373602 AP3B1O00203 1094 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 SUV39H1O43463 412 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 NRDCO43847 1150 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 FURINP09958 794 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 TPBGLP0DKB5 382 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 CXCR5P32302 372 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 SHMT2P34897 504 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 NPY2RP49146 381 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 GPS2Q13227 327 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 FAM199XQ6PEV8 388 aaPredicted RBP21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 SPESP1Q6UW49 350 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 ZNF517Q6ZMY9 492 aaPredicted RBP21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 UNC5AQ6ZN44 842 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 PRELID2Q8N945 189 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 SLC38A9Q8NBW4 561 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 OR5K2Q8NHB8 316 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 LRFN5Q96NI6 719 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 GPR87Q9BY21 358 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 CATSPERZQ9NTU4 200 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 BFARQ9NZS9 450 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 ANAPC5Q9UJX4 755 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 POLHQ9Y253 713 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 KCNMB2Q9Y691 235 aa21.02■□□□□ 0.96
CCDC28B-201ENST00000373602 SPTA1P02549 2419 aa21.02■□□□□ 0.95
CCDC28B-201ENST00000373602 PIPSLA2A3N6 862 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 MAP3K7O43318 606 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 PVRP15151 417 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 CCR7P32248 378 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 CRADDP78560 199 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 ABRQ12979 859 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 ZNF789Q5FWF6 425 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 PRAMEF17Q5VTA0 474 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 LDB1Q86U70 411 aaPredicted RBP21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 SLC22A15Q8IZD6 547 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 OR1L3Q8NH93 324 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 CPT1BQ92523 772 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 RUFY1Q96T51 708 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 TSSK1BQ9BXA7 367 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 AP1M1Q9BXS5 423 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 TWSG1Q9GZX9 223 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 ACTL8Q9H568 366 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 OR6C2Q9NZP2 312 aa21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 MARCH4Q9P2E8 410 aaPredicted RBP21.01■□□□□ 0.95
CCDC28B-201ENST00000373602 CDC14CA4D256 554 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 TMEM150CB9EJG8 249 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 PRMT5O14744 637 aaPredicted RBP21■□□□□ 0.95
CCDC28B-201ENST00000373602 CD3EAPO15446 510 aaKnown RBP21■□□□□ 0.95
CCDC28B-201ENST00000373602 GPC4O75487 556 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 TPSB2P20231 275 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 TTPAP49638 278 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 CSE1LP55060 971 aaKnown RBP21■□□□□ 0.95
CCDC28B-201ENST00000373602 CDK16Q00536 496 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 TPSAB1Q15661 275 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 DNAJC21Q5F1R6 531 aaKnown RBP21■□□□□ 0.95
CCDC28B-201ENST00000373602 PLEKHS1Q5SXH7 462 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 LRRC8BQ6P9F7 803 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 ATG14Q6ZNE5 492 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 C9orf43Q8TAL5 461 aaPredicted RBP21■□□□□ 0.95
CCDC28B-201ENST00000373602 LKAAEAR1Q8TD35 194 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 ASZ1Q8WWH4 475 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 MR1Q95460 341 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 OR2A14Q96R47 310 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 KLHL25Q9H0H3 589 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms