RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GPR162Q16538 588 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 CARTPTQ16568 116 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 RGS21Q2M5E4 152 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 IGFN1Q86VF2 1251 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 RNF168Q8IYW5 571 aaPredicted RBP11.9□□□□□ -0.5
CLIP3-201ENST00000360535 PAPD5Q8NDF8 572 aaKnown RBP11.9□□□□□ -0.5
CLIP3-201ENST00000360535 CHDHQ8NE62 594 aaPredicted RBP11.9□□□□□ -0.5
CLIP3-201ENST00000360535 TSPEARQ8WU66 669 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 FUBP3Q96I24 572 aaKnown RBP eCLIP11.9□□□□□ -0.5
CLIP3-201ENST00000360535 BARD1Q99728 777 aaKnown RBP11.9□□□□□ -0.5
CLIP3-201ENST00000360535 MAGEH1Q9H213 219 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 LOC100130705A0A1B0GUX0 176 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 H0YAE9 185 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 ADAM12O43184 909 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 BCAS1O75363 584 aaPredicted RBP11.9□□□□□ -0.5
CLIP3-201ENST00000360535 PRAMEF1O95521 474 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 OTCP00480 354 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 OCA2Q04671 838 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 RTP2Q5QGT7 225 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 NECAB2Q7Z6G3 386 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 SLCO6A1Q86UG4 719 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 RGL4Q8IZJ4 473 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 EID3Q8N140 333 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 GOLM1Q8NBJ4 401 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 GTF2H4Q92759 462 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 MBOAT4Q96T53 435 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 INPP5KQ9BT40 448 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 SLC25A37Q9NYZ2 338 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 CDH7Q9ULB5 785 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 ORC6Q9Y5N6 252 aa11.9□□□□□ -0.5
CLIP3-201ENST00000360535 TULP3O75386 442 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 CLPXO76031 633 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 CCND3P30281 292 aaPredicted RBP11.9□□□□□ -0.51
CLIP3-201ENST00000360535 FAM189BP81408 668 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 PON2Q15165 354 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 PAGE2BQ5JRK9 111 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 LRRC73Q5JTD7 316 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 IRAK1BP1Q5VVH5 260 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 SUSD1Q6UWL2 747 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 TMEM173Q86WV6 379 aaPredicted RBP11.9□□□□□ -0.51
CLIP3-201ENST00000360535 ABHD11Q8NFV4 315 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 ISG20Q96AZ6 181 aaKnown RBP11.9□□□□□ -0.51
CLIP3-201ENST00000360535 EID2BQ96D98 161 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 NODALQ96S42 347 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 PARVBQ9HBI1 364 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 POLE4Q9NR33 117 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 DNAJB9Q9UBS3 223 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 DNMT3LQ9UJW3 386 aa11.9□□□□□ -0.51
CLIP3-201ENST00000360535 ZNF701M0R085 212 aaPredicted RBP11.89□□□□□ -0.51
CLIP3-201ENST00000360535 M0R3G1 203 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 RGS14O43566 566 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 CBFA2T3O75081 653 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 FLT3LGP49771 235 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 CLCN7P51798 805 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 VBP1P61758 197 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 RELAQ04206 551 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 DNASE1L3Q13609 305 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 SMN1Q16637 294 aaKnown RBP11.89□□□□□ -0.51
CLIP3-201ENST00000360535 CACHD1Q5VU97 1274 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 TMEM236Q5W0B7 351 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 CES5AQ6NT32 575 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 SBSNQ6UWP8 590 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 LRRC8DQ7L1W4 858 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 PDPRQ8NCN5 879 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 RAB2BQ8WUD1 216 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 KCNJ9Q92806 393 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 ERVK-18Q9QC07 812 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 VPS9D1Q9Y2B5 631 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 Q9Y3F1 56 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 CREG1O75629 220 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 FKBP9O95302 570 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 GLUD1P00367 558 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 HTR1AP08908 422 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 CDH3P22223 829 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 TGFBR1P36897 503 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 KPNA1P52294 538 aaPredicted RBP11.89□□□□□ -0.51
CLIP3-201ENST00000360535 CASP9P55211 416 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 RAPSNQ13702 412 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 DDX39BQ13838 428 aaKnown RBP11.89□□□□□ -0.51
CLIP3-201ENST00000360535 MFSD14CQ5VZR4 134 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 SLC24A5Q71RS6 500 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 FKBP9P1Q75LS8 142 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 PEX13Q92968 403 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 UBE2FQ969M7 185 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 EGLN2Q96KS0 407 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 EBPLQ9BY08 206 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 LRTM1Q9HBL6 345 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 NUDT4Q9NZJ9 180 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 CRLS1Q9UJA2 301 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 ARIH1Q9Y4X5 557 aaPredicted RBP11.89□□□□□ -0.51
CLIP3-201ENST00000360535 PCDHB14Q9Y5E9 798 aa11.89□□□□□ -0.51
CLIP3-201ENST00000360535 TTC36A6NLP5 189 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 SLC38A8A6NNN8 435 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 TAPBPO15533 448 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 KDELR3O43731 214 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 SEC14L2O76054 403 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 CLDN7O95471 211 aa11.88□□□□□ -0.51
CLIP3-201ENST00000360535 FADS2O95864 444 aaKnown RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 MYCP01106 439 aaPredicted RBP11.88□□□□□ -0.51
CLIP3-201ENST00000360535 C7P10643 843 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms