RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IRF2BPLQ9H1B7 796 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 NXF3Q9H4D5 531 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 TFB2MQ9H5Q4 396 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 ZFP14Q9HCL3 533 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 HEBP1Q9NRV9 189 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 SLC6A13Q9NSD5 602 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 TRMT13Q9NUP7 481 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 DCAF13Q9NV06 445 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 GALPQ9UBC7 116 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.67□□□□□ -1.34
VPS39-202ENST00000348544 KCNH4Q9UQ05 1017 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 WBP11Q9Y2W2 641 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 MED16Q9Y2X0 877 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 ORC6Q9Y5N6 252 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 A3GALT2U3KPV4 340 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 MCM3APO60318 1980 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 PDCD11Q14690 1871 aaKnown RBP6.67□□□□□ -1.34
VPS39-202ENST00000348544 PCNTO95613 3336 aa6.67□□□□□ -1.34
VPS39-202ENST00000348544 A0A096LPI6 279 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ELOVL7A1L3X0 281 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ZSCAN5BA6NJL1 495 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ARVCFO00192 962 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CAPN5O15484 640 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 PCDHGA12O60330 932 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ONECUT3O60422 494 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 SERPINF2P08697 491 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 EFNA1P20827 205 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 AKAP5P24588 427 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 C21orf33P30042 268 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 CTSKP43235 329 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 MAGEA11P43364 429 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 PPP3CCP48454 512 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 NRIP1P48552 1158 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 LIMK1P53667 647 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 MAXP61244 160 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 YIF1BQ5BJH7 314 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 PRAMEF18Q5VWM3 479 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 KDM4DQ6B0I6 523 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 NEK5Q6P3R8 708 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 SHQ1Q6PI26 577 aaKnown RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 ZNF438Q7Z4V0 828 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 GPR149Q86SP6 731 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 HIPK1Q86Z02 1210 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 FBXO16Q8IX29 292 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 IQCF2Q8IXL9 164 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 PHACTR4Q8IZ21 702 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 TCAIMQ8N3R3 496 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 AADATQ8N5Z0 425 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CDYL2Q8N8U2 506 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 TP53I13Q8NBR0 393 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 AGBL3Q8NEM8 1001 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 NETO1Q8TDF5 533 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 GTF2H4Q92759 462 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 DNASE1L2Q92874 299 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 KIAA1191Q96A73 305 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 TNIP3Q96KP6 325 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 Q96MT0 163 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 OR2A14Q96R47 310 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ZBED2Q9BTP6 218 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 THUMPD3Q9BV44 507 aaKnown RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 NUAK2Q9H093 628 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 GABARAPL1Q9H0R8 117 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ERVK13-1Q9NX77 482 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 TAS2R9Q9NYW1 312 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CDH9Q9ULB4 789 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 NDRG4Q9ULP0 352 aaKnown RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 POLR3HQ9Y535 204 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 GMPPBQ9Y5P6 360 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CSADQ9Y600 493 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 SLC12A8A0AV02 714 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ASB14A6NK59 587 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ARHGAP33O14559 1287 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 LDB2O43679 373 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 SEC22BO75396 215 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CREG1O75629 220 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 RECQL4O94761 1208 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 RECQL5O94762 991 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 SNX4O95219 450 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 SERPINA1P01009 418 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 PGK2P07205 417 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 MMP2P08253 660 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 SLC2A3P11169 496 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 UBL4AP11441 157 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 S100A5P33763 92 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 ETV6P41212 452 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 RFX2P48378 723 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 GMPSP49915 693 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 NRG1Q02297 640 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 CREMQ03060 361 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 C19orf57Q0VDD7 668 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 SLAMF1Q13291 335 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 RBBP7Q16576 425 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 DUSP7Q16829 419 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 TBRG1Q3YBR2 411 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 GJC2Q5T442 439 aaPredicted RBP6.66□□□□□ -1.34
VPS39-202ENST00000348544 PAQR3Q6TCH7 311 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 LRRC8DQ7L1W4 858 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 SLC46A3Q7Z3Q1 461 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 CCDC190Q86UF4 302 aa6.66□□□□□ -1.34
VPS39-202ENST00000348544 AMER2Q8N7J2 671 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms