RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 EBLN1P0CF75 366 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 FCGR1AP12314 374 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 EPB42P16452 691 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 PCSK6P29122 969 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 ALDH3B2P48448 385 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 WDR5P61964 334 aaKnown RBP15.11■□□□□ 0.01
UPF3B-202ENST00000345865 TMEM25Q86YD3 366 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 VRK3Q8IV63 474 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 FAM86B1Q8N7N1 296 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 CHST14Q8NCH0 376 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 CLHC1Q8NHS4 586 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 SLC22A17Q8WUG5 538 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 SLC13A3Q8WWT9 602 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 USP7Q93009 1102 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 NSMCE2Q96MF7 247 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 MCCC1Q96RQ3 725 aaPredicted RBP15.11■□□□□ 0.01
UPF3B-202ENST00000345865 ZBP1Q9H171 429 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 ZDHHC6Q9H6R6 413 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 SLC6A13Q9NSD5 602 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 TMEM39AQ9NV64 488 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 HCFC1R1Q9NWW0 138 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 KCTD5Q9NXV2 234 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 SLC25A37Q9NYZ2 338 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 TRPS1Q9UHF7 1281 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 CD84Q9UIB8 345 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 ZNF510Q9Y2H8 683 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 TRAV19A0A0A6YYK7 116 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 UPK1AO00322 258 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 SEC22BO75396 215 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 UGT2B4P06133 528 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 CDH2P19022 906 aaPredicted RBP15.11■□□□□ 0.01
UPF3B-202ENST00000345865 GNPDA1P46926 289 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 RPIAP49247 311 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 ARHGEF6Q15052 776 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 CPSF6Q16630 551 aaKnown RBP eCLIP15.11■□□□□ 0.012e-11■■■■□ 23.1
UPF3B-202ENST00000345865 BORAQ6PGQ7 559 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 LILRA6Q6PI73 481 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 DET1Q7L5Y6 550 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 TRIML2Q8N7C3 387 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 COPS8Q99627 209 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 SH3GL3Q99963 347 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 CORO1BQ9BR76 489 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 CLK4Q9HAZ1 481 aaKnown RBP15.11■□□□□ 0.01
UPF3B-202ENST00000345865 VCX3AQ9NNX9 186 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 PTTG2Q9NZH5 202 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 ZNF639Q9UID6 485 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 EIF3LQ9Y262 564 aaKnown RBP15.11■□□□□ 0.01
UPF3B-202ENST00000345865 C5orf42Q9H799 3197 aa15.11■□□□□ 0.01
UPF3B-202ENST00000345865 A0A1B0GVG6 124 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 ABHD14A-ACY1A0A1B0GW23 586 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 KANSL1LA0AUZ9 987 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 SLC28A1O00337 649 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 FGF18O76093 207 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 KCNH1O95259 989 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 SNAP29O95721 258 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 LDLRP01130 860 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 LRG1P02750 347 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 C8AP07357 584 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 CSF2RAP15509 400 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 GGT1P19440 569 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 SLC5A2P31639 672 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 PHC1P78364 1004 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 HTRA3P83110 453 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 CRY1Q16526 586 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 GTDC1Q4AE62 458 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 CYBRD1Q53TN4 286 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 PRR23BQ6ZRT6 265 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 RNF165Q6ZSG1 346 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 METTL3Q86U44 580 aaKnown RBP15.1■□□□□ 0.01
UPF3B-202ENST00000345865 CHCHD4Q8N4Q1 142 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 MAGEE2Q8TD90 523 aaPredicted RBP15.1■□□□□ 0.01
UPF3B-202ENST00000345865 CYGBQ8WWM9 190 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 VPS50Q96JG6 964 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 ACPTQ9BZG2 426 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 BRD9Q9H8M2 597 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 LRTM1Q9HBL6 345 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.1■□□□□ 0.01
UPF3B-202ENST00000345865 ARL15Q9NXU5 204 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 B4GALT6Q9UBX8 382 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 MAGEL2Q9UJ55 1249 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 PTPRSQ13332 1948 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 IGLV3-16A0A075B6K0 115 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 IFRD1O00458 451 aaPredicted RBP15.1■□□□□ 0.01
UPF3B-202ENST00000345865 MTX2O75431 263 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 SEC24DO94855 1032 aaPredicted RBP15.1■□□□□ 0.01
UPF3B-202ENST00000345865 WDR47O94967 919 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 PGRP06401 933 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 PCNAP12004 261 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 HSPA14Q0VDF9 509 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 ADRM1Q16186 407 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 TTLL9Q3SXZ7 439 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 USP39Q53GS9 565 aaKnown RBP15.1■□□□□ 0.01
UPF3B-202ENST00000345865 SERPINA13PQ6UXR4 307 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 DNAJC14Q6Y2X3 702 aaPredicted RBP15.1■□□□□ 0.01
UPF3B-202ENST00000345865 B3GNT6Q6ZMB0 384 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 Q6ZVU0 165 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 USP45Q70EL2 814 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 OFCC1Q8IZS5 231 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 ZNF786Q8N393 782 aa15.1■□□□□ 0.01
UPF3B-202ENST00000345865 OR8J3Q8NGG0 315 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms