RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ZNF26P17031 533 aaPredicted RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 ETV3P41162 512 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CEACAM7Q14002 265 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 SQLEQ14534 574 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ACOX1Q15067 660 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ZNF284Q2VY69 593 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 HENMT1Q5T8I9 393 aaKnown RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 ANKS6Q68DC2 871 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 NXNQ6DKJ4 435 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CHERPQ8IWX8 916 aaKnown RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 TNIP2Q8NFZ5 429 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 LKAAEAR1Q8TD35 194 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 SCAMP4Q969E2 229 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 ARRDC3Q96B67 414 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 RIOK2Q9BVS4 552 aaKnown RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 C1QTNF3Q9BXJ4 246 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 TRIM15Q9C019 465 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 PLGRKTQ9HBL7 147 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 NUDT4Q9NZJ9 180 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 CD274Q9NZQ7 290 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 TMPRSS11EQ9UL52 423 aa12.58□□□□□ -0.4
CLK3-201ENST00000345005 PAIP2BQ9ULR5 123 aaKnown RBP12.58□□□□□ -0.4
CLK3-201ENST00000345005 ATG2BQ96BY7 2078 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 C5orf42Q9H799 3197 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 A0A087WXM4 84 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 EIF3FO00303 357 aaPredicted RBP12.57□□□□□ -0.4
CLK3-201ENST00000345005 WNT9AO14904 365 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 KPNA5O15131 536 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 HNRNPRO43390 633 aaKnown RBP12.57□□□□□ -0.4
CLK3-201ENST00000345005 ATP6V1B1P15313 513 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 EEF1DP29692 281 aaKnown RBP12.57□□□□□ -0.4
CLK3-201ENST00000345005 AKT1P31749 480 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 IL12RB1P42701 662 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 PSME3P61289 254 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 B4GALNT1Q00973 533 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 SPIDRQ14159 915 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 GRIN2CQ14957 1233 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 LRIT3Q3SXY7 679 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 SAMD4BQ5PRF9 694 aaKnown RBP12.57□□□□□ -0.4
CLK3-201ENST00000345005 FAM46CQ5VWP2 391 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 KRT80Q6KB66 452 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 FRA10AC1Q70Z53 315 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 CYP2U1Q7Z449 544 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 GAB3Q8WWW8 586 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 RMND5BQ96G75 393 aaPredicted RBP12.57□□□□□ -0.4
CLK3-201ENST00000345005 MSLNLQ96KJ4 702 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 RPP25Q9BUL9 199 aaKnown RBP12.57□□□□□ -0.4
CLK3-201ENST00000345005 FAM126AQ9BYI3 521 aaPredicted RBP12.57□□□□□ -0.4
CLK3-201ENST00000345005 ABCG8Q9H221 673 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 CLK4Q9HAZ1 481 aaKnown RBP12.57□□□□□ -0.4
CLK3-201ENST00000345005 PRSS16Q9NQE7 514 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 ZNHIT2Q9UHR6 403 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 TRAF6Q9Y4K3 522 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 REV3LO60673 3130 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 EYSQ5T1H1 3165 aa12.57□□□□□ -0.4
CLK3-201ENST00000345005 H3BNH8 94 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 ARNTLO00327 626 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 QSOX1O00391 747 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 RAD51BO15315 384 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 E2F6O75461 281 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 AP2A2O94973 939 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 SIX3O95343 332 aaPredicted RBP12.56□□□□□ -0.4
CLK3-201ENST00000345005 S100BP04271 92 aaPredicted RBP12.56□□□□□ -0.4
CLK3-201ENST00000345005 EPHX1P07099 455 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 FGF4P08620 206 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 ADRB3P13945 408 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 MSH3P20585 1137 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 EPHA3P29320 983 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 LTBRP36941 435 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 TNFRSF4P43489 277 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 ATP4BP51164 291 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 MS4A2Q01362 244 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 TGFBIQ15582 683 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 KCTD21Q4G0X4 260 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 LDLRAP1Q5SW96 308 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 C6orf52Q5T4I8 152 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 PRMT9Q6P2P2 845 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 CHSY3Q70JA7 882 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 RPS27LQ71UM5 84 aaKnown RBP12.56□□□□□ -0.4
CLK3-201ENST00000345005 ERN2Q76MJ5 926 aaKnown RBP12.56□□□□□ -0.4
CLK3-201ENST00000345005 CARM1Q86X55 608 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 CLYBLQ8N0X4 340 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 LILRA2Q8N149 483 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 GALNT4Q8N4A0 578 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 CSGALNACT1Q8TDX6 532 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 BTN2A2Q8WVV5 523 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 RAB7BQ96AH8 199 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 AP2M1Q96CW1 435 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 CHFRQ96EP1 664 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 COQ10AQ96MF6 247 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 VPS35Q96QK1 796 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 SLC25A23Q9BV35 468 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 HDAC8Q9BY41 377 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 WDR55Q9H6Y2 383 aaPredicted RBP12.56□□□□□ -0.4
CLK3-201ENST00000345005 SH3GLB1Q9Y371 365 aa12.56□□□□□ -0.4
CLK3-201ENST00000345005 TNPO3Q9Y5L0 923 aaKnown RBP12.56□□□□□ -0.4
CLK3-201ENST00000345005 BRWD1Q9NSI6 2320 aa12.55□□□□□ -0.4
CLK3-201ENST00000345005 NCF1BA6NI72 391 aaPredicted RBP12.55□□□□□ -0.4
CLK3-201ENST00000345005 NCF1CA8MVU1 366 aaPredicted RBP12.55□□□□□ -0.4
CLK3-201ENST00000345005 NEMP1O14524 444 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms