RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CTPS1P17812 591 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 STOMP27105 288 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 EPHX2P34913 555 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 MASP1P48740 699 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 MAPK10P53779 464 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 CHRNB3Q05901 458 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF33AQ06730 810 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 PTGR1Q14914 329 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 CALCRLQ16602 461 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 AOC3Q16853 763 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 LRRC26Q2I0M4 334 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 TUSC1Q2TAM9 212 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 BCL7AQ4VC05 210 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 GLRA4Q5JXX5 417 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 PAPD4Q6PIY7 484 aaKnown RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 FAM122BQ7Z309 247 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 R3HCC1LQ7Z5L2 792 aaKnown RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 DPPA2Q7Z7J5 298 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 CCDC190Q86UF4 302 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 NAXDQ8IW45 347 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 CELF2-AS1Q8N7Q2 184 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 RASGRP4Q8TDF6 673 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 SCARB1Q8WTV0 552 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 KLF6Q99612 283 aaPredicted RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 APBA2Q99767 749 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 B3GNT5Q9BYG0 378 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 ACTR6Q9GZN1 396 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 PUS7LQ9H0K6 701 aaKnown RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 CHST7Q9NS84 486 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 USP22Q9UPT9 525 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 RNF6Q9Y252 685 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 VPS9D1Q9Y2B5 631 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 RPH3AQ9Y2J0 694 aaPredicted RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 HACD1B0YJ81 288 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 INMT-MINDY4F8WBC2 141 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 VPS4BO75351 444 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 ERN1O75460 977 aaKnown RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 RFPL1O75677 317 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 THEGLP0DJG4 465 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 HTR1BP28222 390 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 MAP2K3P46734 347 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 RBP2P50120 134 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 FXR2P51116 673 aaKnown RBP eCLIP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 RPS6P62753 249 aaKnown RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 SLC3A1Q07837 685 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 TUBB3Q13509 450 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 WSCD2Q2TBF2 565 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 PTPN20Q4JDL3 420 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 MBLAC2Q68D91 279 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 ACAD10Q6JQN1 1059 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 SLC25A25Q6KCM7 469 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 PIWIL3Q7Z3Z3 882 aaKnown RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 FBXO33Q7Z6M2 555 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 ADPRHL1Q8NDY3 354 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 CHDHQ8NE62 594 aaPredicted RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 ADAMTS14Q8WXS8 1223 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 RRNAD1Q96FB5 475 aaKnown RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 SERAC1Q96JX3 654 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 GAD1Q99259 594 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 C2orf88Q9BSF0 95 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 EDEM2Q9BV94 578 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 CDK19Q9BWU1 502 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 TINAGL1Q9GZM7 467 aaPredicted RBP4.09□□□□□ -1.76
NEDD4-201ENST00000338963 POLE4Q9NR33 117 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 HCN3Q9P1Z3 774 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 SARDHQ9UL12 918 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 SLC6A5Q9Y345 797 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 A2ML1A8K2U0 1454 aa4.09□□□□□ -1.76
NEDD4-201ENST00000338963 PMS2P1A4D2B8 440 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L10C9JJH3 530 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SMAD6O43541 496 aaKnown RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 FAM20BO75063 409 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SERPINA1P01009 418 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 JUNDP17535 347 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ACO1P21399 889 aaKnown RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 FMO4P31512 558 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SDC2P34741 201 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 BRCC3P46736 316 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 GATMP50440 423 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 P2RY4P51582 365 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 MAP2K6P52564 334 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 PKNOX1P55347 436 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 CTSWP56202 376 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SNRPFP62306 86 aaKnown RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 HTRA4P83105 476 aaPredicted RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 UBXN2BQ14CS0 331 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 LYPD8Q6UX82 237 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ISLR2Q6UXK2 745 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 MAMDC2Q7Z304 686 aaPredicted RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SLC22A9Q8IVM8 553 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF561Q8N587 486 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 STOML3Q8TAV4 291 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 FAM216AQ8WUB2 273 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 RAB24Q969Q5 203 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 UBXN10Q96LJ8 280 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 MYRFLQ96LU7 910 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 WDFY2Q96P53 400 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 NT5C1AQ9BXI3 368 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 HDHD5Q9BXW7 423 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 RANGRFQ9HD47 186 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms