RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 HIST1H2ADP20671 130 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 DGKAP23743 735 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 KRT6CP48668 564 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 SUOXP51687 545 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 CACNG1Q06432 222 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 CD47Q08722 323 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 C17orf99Q6UX52 265 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 RORBQ92753 470 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 HIST1H2AHQ96KK5 128 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 NODALQ96S42 347 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 HIST1H2AJQ99878 128 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 H2AFJQ9BTM1 129 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 TTPALQ9BTX7 342 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 AMBNQ9NP70 447 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 ST14Q9Y5Y6 855 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 MYLKQ15746 1914 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 SYN3O14994 580 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 TSPAN12O95859 305 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 CKMP06732 381 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 CYBAP13498 195 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 ALDH7A1P49419 539 aaKnown RBP12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 CARTPTQ16568 116 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 RGS21Q2M5E4 152 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 DEFB128Q7Z7B8 93 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 ADGRG2Q8IZP9 1017 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 ARL10Q8N8L6 244 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 PCSK9Q8NBP7 692 aaKnown RBP12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 FBXO22Q8NEZ5 403 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 BBS2Q9BXC9 721 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 STARD7Q9NQZ5 370 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 DNAJB9Q9UBS3 223 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 CD84Q9UIB8 345 aa12.64□□□□□ -0.39
HMGCS1-201ENST00000325110 ZSWIM8A7E2V4 1837 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 RFXANKO14593 260 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 BCKDKO14874 412 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 LSM1O15116 133 aaKnown RBP12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 INMTO95050 263 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 WISP3O95389 354 aaPredicted RBP12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 ANGPTL1O95841 491 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 MAGP20916 626 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 CTGFP29279 349 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 FKBP1BP68106 108 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 GPR17Q13304 367 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 XKR7Q5GH72 579 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 CES5AQ6NT32 575 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 SLCO6A1Q86UG4 719 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 IFNL1Q8IU54 200 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 RBFAQ8N0V3 343 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 CENPSQ8N2Z9 138 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 RNF175Q8N4F7 328 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 TERB1Q8NA31 727 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 OR7A2PQ8NGA2 310 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 TBC1D15Q8TC07 691 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 PEX13Q92968 403 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 WBP2Q969T9 261 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 COX4I2Q96KJ9 171 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 ZNF583Q96ND8 569 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 TRIB3Q96RU7 358 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.63□□□□□ -0.395e-6■□□□□ 10.4
HMGCS1-201ENST00000325110 CARS2Q9HA77 564 aaKnown RBP12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 FAM118AQ9NWS6 357 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 GNPTGQ9UJJ9 305 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 ZNF229Q9UJW7 825 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 PRSS21Q9Y6M0 314 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 TMEM247A6NEH6 219 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 OR7A17O14581 309 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 STK16O75716 305 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 WDR47O94967 919 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 ATF6P18850 670 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 CSKP41240 450 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 PLA2G16P53816 162 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 CHRNA6Q15825 494 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 ZNF829Q3KNS6 432 aaPredicted RBP12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 COQ5Q5HYK3 327 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 DOK6Q6PKX4 331 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 DLEU7Q6UYE1 221 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 MICU2Q8IYU8 434 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 LEMD2Q8NC56 503 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 SH3GL1Q99961 368 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 BRINP2Q9C0B6 783 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 TLR9Q9NR96 1032 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 DHRS7Q9Y394 339 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 NYNRINQ9P2P1 1898 aaKnown RBP12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 ABCB7O75027 752 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 NADKO95544 446 aaPredicted RBP12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 CAPNS1P04632 268 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 GGT1P19440 569 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 IGFBP5P24593 272 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 TTLL9Q3SXZ7 439 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 PAGE2BQ5JRK9 111 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 C6orf141Q5SZD1 244 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 MCOLN3Q8TDD5 553 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 TSPEARQ8WU66 669 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 ACDQ96AP0 544 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 ROGDIQ9GZN7 287 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 PDFQ9HBH1 243 aa12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 PAIP2BQ9ULR5 123 aaKnown RBP12.63□□□□□ -0.39
HMGCS1-201ENST00000325110 CREG1O75629 220 aa12.62□□□□□ -0.39
HMGCS1-201ENST00000325110 STC2O76061 302 aa12.62□□□□□ -0.39
HMGCS1-201ENST00000325110 ALPLP05186 524 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms