RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CXCL14O95715 111 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 DLDP09622 509 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 LAG3P18627 525 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 RAB2AP61019 212 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 PHTF2Q8N3S3 785 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 CMASQ8NFW8 434 aaPredicted RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 TRUB1Q8WWH5 349 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 FRMD6Q96NE9 622 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 TUBA1CQ9BQE3 449 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 ZNF696Q9H7X3 374 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 NUDT4Q9NZJ9 180 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 DOT1LQ8TEK3 1739 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 IQCMA0A1B0GVH7 501 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 K7EPI3 171 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 NDUFB5O43674 189 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 APOL3O95236 402 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 GPR1P46091 355 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 ATXN1P54253 815 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 VARS2Q5ST30 1063 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 RNF44Q7L0R7 432 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 ZC3H3Q8IXZ2 948 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 LSM14AQ8ND56 463 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 OR6K2Q8NGY2 324 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 DNAJB8Q8NHS0 232 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 VANGL1Q8TAA9 524 aaPredicted RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 CLEC4CQ8WTT0 213 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 C7orf43Q8WVR3 580 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 RFKQ969G6 155 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 AZIN2Q96A70 460 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 LRRC58Q96CX6 371 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 FEM1CQ96JP0 617 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 SLC6A15Q9H2J7 730 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 IPPKQ9H8X2 491 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 EMC3Q9P0I2 261 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 ACTR3BQ9P1U1 418 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 TBC1D14Q9P2M4 693 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 EOMESO95936 686 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 ANXA8P13928 327 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 PITPNAQ00169 270 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 DSC2Q02487 901 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 MOGSQ13724 837 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 POM121L1PQ3SYA9 428 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 IQCCQ4KMZ1 466 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.31□□□□□ -0.6
VPS39-201ENST00000318006 RAET1GQ6H3X3 334 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 EPGNQ6UW88 154 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 ELMOD2Q8IZ81 293 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 CSGALNACT1Q8TDX6 532 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 UPF1Q92900 1129 aaKnown RBP eCLIP11.31□□□□□ -0.63e-10■■■■□ 20.6
VPS39-201ENST00000318006 CHIAQ9BZP6 476 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 ZNF395Q9H8N7 513 aaPredicted RBP11.31□□□□□ -0.6
VPS39-201ENST00000318006 TXNRD2Q9NNW7 524 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 SEMA3GQ9NS98 782 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 SEC14L3Q9UDX4 400 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 C1QTNF3-AMACRE9PGA6 284 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 ACSL4O60488 711 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 GLUD1P00367 558 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 CFHP08603 1231 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 MAGEA2P43356 314 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 TAS2R39P59534 338 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 RPTNQ6XPR3 784 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 OAFQ86UD1 273 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 HID1Q8IV36 788 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 ZNF433Q8N7K0 673 aaPredicted RBP11.31□□□□□ -0.6
VPS39-201ENST00000318006 VMP1Q96GC9 406 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 TWNKQ96RR1 684 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 ZNF717Q9BY31 904 aaPredicted RBP11.31□□□□□ -0.6
VPS39-201ENST00000318006 OR2B2Q9GZK3 357 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 CFAP97Q9P2B7 532 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 A0A088AWK7 358 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 HIST1H2ABP04908 130 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 ZNF10P21506 573 aaPredicted RBP11.31□□□□□ -0.6
VPS39-201ENST00000318006 IL1R2P27930 398 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 NMBRP28336 390 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 GPX6P59796 221 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 FOXM1Q08050 763 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 CBLBQ13191 982 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 HNRNPDQ14103 355 aaKnown RBP11.31□□□□□ -0.6
VPS39-201ENST00000318006 HIST3H2AQ7L7L0 130 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 CRYBG2Q8N1P7 616 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 SEC14L1Q92503 715 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 HIST1H2ACQ93077 130 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 GTPBP3Q969Y2 492 aaKnown RBP11.31□□□□□ -0.6
VPS39-201ENST00000318006 SLC30A2Q9BRI3 323 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 TBC1D17Q9HA65 648 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 AMBNQ9NP70 447 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 ERVK-11Q9UQG0 969 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 RPL36Q9Y3U8 105 aaKnown RBP11.31□□□□□ -0.6
VPS39-201ENST00000318006 N6AMT1Q9Y5N5 214 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 RAI2Q9Y5P3 530 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 LTBP3Q9NS15 1303 aa11.31□□□□□ -0.6
VPS39-201ENST00000318006 FANCGO15287 622 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 IFNA6P05013 189 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 PRPS2P11908 318 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 SCNN1AP37088 669 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 PBX3P40426 434 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ZNF45Q02386 682 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 TEAD4Q15561 434 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 TIGD5Q53EQ6 642 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ZNF697Q5TEC3 545 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms