RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FARSAQ9Y285 508 aaKnown RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 PTCH2Q9Y6C5 1203 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 ARL5CA6NH57 179 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 M0R233 179 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 GJA1P17302 382 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 GNAZP19086 355 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 HK1P19367 917 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 PTPN9P43378 593 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 DPY19L1Q2PZI1 675 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 CD300LFQ8TDQ1 290 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 MIPEPQ99797 713 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 PADI2Q9Y2J8 665 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 HSPB11Q9Y547 144 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 AQP12BA6NM10 295 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 KCNQ2O43526 872 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 FOSL1P15407 271 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 IL7RP16871 459 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 KELP23276 732 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 HTR7P34969 479 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 RPIAP49247 311 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 FAM174BQ3ZCQ3 159 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 CAND1Q86VP6 1230 aaKnown RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 AQP12AQ8IXF9 295 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 ALG3Q92685 438 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 POLR2J3Q9H1A7 115 aaKnown RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 FETUBQ9UGM5 382 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 CD163L1Q9NR16 1453 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 CSN2P05814 226 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 MOGQ16653 247 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF829Q3KNS6 432 aaPredicted RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 ANKRD46Q86W74 232 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 SMG8Q8ND04 991 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 STON2Q8WXE9 905 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 RHBDF1Q96CC6 855 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 FUZQ9BT04 418 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 ABHD16BQ9H3Z7 469 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 FAM105AQ9NUU6 356 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 THUMPD1Q9NXG2 353 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 ROBO3Q96MS0 1386 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 TPST2O60704 377 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 S100PP25815 95 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 YAP1P46937 504 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 PSEN2P49810 448 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 PUM1Q14671 1186 aaKnown RBP eCLIP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 PRICKLE1Q96MT3 831 aaPredicted RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 EI24O14681 340 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 PPM1AP35813 382 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 HSPB3Q12988 150 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 AIMP2Q13155 320 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 DAG1Q14118 895 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 OR4K2Q8NGD2 314 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 KLHL6Q8WZ60 621 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 USP20Q9Y2K6 914 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 CMAHPQ9Y471 501 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 FAM234BA2RU67 622 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 TRIM64A6NGJ6 449 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF227Q86WZ6 799 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 ACO2Q99798 780 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 IL17RBQ9NRM6 502 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 TMEM9Q9P0T7 183 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 FBXL21Q9UKT6 434 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 POFUT2Q9Y2G5 429 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 NOP16Q9Y3C1 178 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 NRCAMQ92823 1304 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 ILVBLA1L0T0 632 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 PPM1JQ5JR12 505 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 TRAPPC12Q8WVT3 735 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 OSBPL7Q9BZF2 842 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 TAS2R3Q9NYW6 316 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 VIRMAQ69YN4 1812 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 MYH9P35579 1960 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 SCAMP3O14828 347 aaKnown RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 RAB36O95755 333 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 IFNA2P01563 188 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 IL12BP29460 328 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 SLC1A2P43004 574 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 E2F1Q01094 437 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 PAOXQ6QHF9 649 aa13.65□□□□□ -0.22
CSPG4-201ENST00000308508 ZBED6CLQ96FA7 236 aaPredicted RBP13.65□□□□□ -0.22
CSPG4-201ENST00000308508 A0A1W2PRQ8 180 aa13.65□□□□□ -0.23
CSPG4-201ENST00000308508 B8ZZF3 427 aa13.65□□□□□ -0.23
CSPG4-201ENST00000308508 TISP43B9A030 160 aa13.65□□□□□ -0.23
CSPG4-201ENST00000308508 PAGE1O75459 146 aa13.65□□□□□ -0.23
CSPG4-201ENST00000308508 SPAM1P38567 509 aa13.65□□□□□ -0.23
CSPG4-201ENST00000308508 SLC13A3Q8WWT9 602 aa13.65□□□□□ -0.23
CSPG4-201ENST00000308508 SPOCK2Q92563 424 aa13.65□□□□□ -0.23
CSPG4-201ENST00000308508 KIAA1522Q9P206 1035 aaPredicted RBP13.65□□□□□ -0.23
CSPG4-201ENST00000308508 NWD1Q149M9 1564 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 HMGN1P05114 100 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 UBA1P22314 1058 aaKnown RBP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 ALG1LQ6GMV1 187 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 ALKBH2Q6NS38 261 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 GATAD2BQ8WXI9 593 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 CPNE2Q96FN4 548 aaPredicted RBP13.64□□□□□ -0.23
CSPG4-201ENST00000308508 TM9SF3Q9HD45 589 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 TRIM36Q9NQ86 728 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 GNG2P59768 71 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 BNIP3Q12983 259 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 GPR135Q8IZ08 494 aa13.64□□□□□ -0.23
CSPG4-201ENST00000308508 OXR1Q8N573 874 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms