RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 AP2A2O94973 939 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 FCER2P06734 321 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ALOX12P18054 663 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 SLC1A2P43004 574 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PTGER3P43115 390 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 KCNJ1P48048 391 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 THOP1P52888 689 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ATXN1P54253 815 aaKnown RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 HERVK_113P63132 956 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 KCNJ11Q14654 390 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 EARS2Q5JPH6 523 aaKnown RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF517Q6ZMY9 492 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 RALGPS2Q86X27 583 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 RXFP2Q8WXD0 754 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CPT1BQ92523 772 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CDKN2AIPNLQ96HQ2 116 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CORO1BQ9BR76 489 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ERVK-6Q9BXR3 956 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ITM2CQ9NQX7 267 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CATSPERZQ9NTU4 200 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 MARCOQ9UEW3 520 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 KCNN3Q9UGI6 736 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 KCNE2Q9Y6J6 123 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 COL1A1P02452 1464 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CXCL11O14625 94 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 SLITRK3O94933 977 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PRAMEF1O95521 474 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PFKLP17858 780 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 NR4A2P43354 598 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ETV1P50549 477 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 NFKB2Q00653 900 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ORC1Q13415 861 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 TBCEQ15813 527 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 NKAPLQ5M9Q1 402 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 KCTD1Q719H9 257 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ARMCX6Q7L4S7 300 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 EEPD1Q7L9B9 569 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 TNS4Q8IZW8 715 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PYDC1Q8WXC3 89 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 FCRL5Q96RD9 977 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PPA2Q9H2U2 334 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF275Q9NSD4 429 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 EXD2Q9NVH0 621 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PCNX2A6NKB5 2137 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ENTPD6O75354 484 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 IFNW1P05000 195 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CKBP12277 381 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 YBX3P16989 372 aaKnown RBP eCLIP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 TFE3P19532 575 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PRPS1L1P21108 318 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 HTR2AP28223 471 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 AKT2P31751 481 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CTNNB1P35222 781 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 SCAPQ12770 1279 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF792Q3KQV3 632 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 TEX44Q53QW1 395 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF311Q5JNZ3 666 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 IQSEC1Q6DN90 963 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 OR52E8Q6IFG1 317 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CIR1Q86X95 450 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 NAT8LQ8N9F0 302 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ISL2Q96A47 359 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CMTM3Q96MX0 182 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 C2orf49Q9BVC5 232 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 MTFR1LQ9H019 292 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 OSBPL2Q9H1P3 480 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 OR51E2Q9H255 320 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 SLAMF7Q9NQ25 335 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 TRNAU1APQ9NX07 287 aaKnown RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 GPRC5DQ9NZD1 345 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 VWA7Q9Y334 891 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 FER1L4A9Z1Z3 1794 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 F5H5T6 163 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 M0R233 179 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ATMINO43313 823 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 UGDHO60701 494 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PGLSO95336 258 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF182P17025 639 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CSTF2P33240 577 aaKnown RBP eCLIP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 MLLT3P42568 568 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CPT1AP50416 773 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ABATP80404 500 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 CACNB2Q08289 660 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 NADK2Q4G0N4 442 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 TSPAN33Q86UF1 283 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 IFNL1Q8IU54 200 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 OFCC1Q8IZS5 231 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 BRSK1Q8TDC3 778 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 GEMIN6Q8WXD5 167 aaKnown RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 NXNL1Q96CM4 212 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 TRNT1Q96Q11 434 aaKnown RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 AGAP2Q99490 1192 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 DPYSL5Q9BPU6 564 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 EFCAB11Q9BUY7 163 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 ACTR8Q9H981 624 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 PCDHB16Q9NRJ7 776 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 RUVBL1Q9Y265 456 aaKnown RBP5.16□□□□□ -1.58
SCN1A-201ENST00000303395 SLC37A4O43826 429 aa5.16□□□□□ -1.58
SCN1A-201ENST00000303395 EEDO75530 441 aaKnown RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms