RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SLC16A9Q7RTY1 509 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 DGLUCYQ7Z3D6 616 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 RIOX2Q8IUF8 465 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CCDC54Q8NEL0 328 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 TBC1D15Q8TC07 691 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 C1GALT1C1Q96EU7 318 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CTRCQ99895 268 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ZFYVE28Q9HCC9 887 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 MYOZ2Q9NPC6 264 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ACP6Q9NPH0 428 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 SDR39U1Q9NRG7 319 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 ADPRHL2Q9NX46 363 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 KLHL28Q9NXS3 571 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ZNF226Q9NYT6 803 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 EIF2B4Q9UI10 523 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 ZNF230Q9UIE0 474 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 ERVK-11Q9UQG0 969 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 TCAF1Q9Y4C2 921 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 SCN4AP35499 1836 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 BAZ2BQ9UIF8 2168 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 G3V2L1 256 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 K7EPK0 472 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ERN1O75460 977 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 FGFR1P11362 822 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 RYKP34925 604 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MC1RQ01726 317 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MXD1Q05195 221 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 LRP8Q14114 963 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 PRAMEF17Q5VTA0 474 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 USP51Q70EK9 711 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 FAM71E2Q8N5Q1 922 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 RASGEF1AQ8N9B8 481 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CHAC2Q8WUX2 184 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 SLC35F5Q8WV83 523 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TCEAL3Q969E4 200 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 DHRS1Q96LJ7 313 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 NODALQ96S42 347 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ACOX2Q99424 681 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ELAC1Q9H777 363 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 SPON1Q9HCB6 807 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 FANCFQ9NPI8 374 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 OLAHQ9NV23 265 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 EMCNQ9ULC0 261 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MFHAS1Q9Y4C4 1052 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CARNS1A5YM72 827 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CLCA1A8K7I4 914 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ZNF99A8MXY4 864 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 AKAP8O43823 692 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 ANXA5P08758 320 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 VAMP1P23763 118 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 PRKAR1BP31321 381 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CTHP32929 405 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MTAPQ13126 283 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 BCL2A1Q16548 175 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 SH3D19Q5HYK7 790 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 FBXO47Q5MNV8 452 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 FAM117BQ6P1L5 589 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 AGMOQ6ZNB7 445 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 P2RY8Q86VZ1 359 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ARHGAP12Q8IWW6 846 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 OFCC1Q8IZS5 231 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ZNF433Q8N7K0 673 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 CHST4Q8NCG5 386 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 PABPC5Q96DU9 382 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 ELOVL4Q9GZR5 314 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MFSD1Q9H3U5 465 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 NMRK2Q9NPI5 230 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MIEF1Q9NQG6 463 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 SNTG1Q9NSN8 517 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ZNF639Q9UID6 485 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ILVBLA1L0T0 632 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 OR6C6A6NF89 314 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 HSBP1L1C9JCN9 74 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TXNL1O43396 289 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ORC5O43913 435 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 RETP07949 1114 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 SRPRAP08240 638 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 SDC2P34741 201 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 GMPRP36959 345 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 GRIA3P42263 894 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MAPK9P45984 424 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 LEPRP48357 1165 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 GRK1Q15835 563 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ZNF470Q6ECI4 717 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TMEM17Q86X19 198 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 HID1Q8IV36 788 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CLIP4Q8N3C7 705 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 FSTL5Q8N475 847 aaPredicted RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 PCDH20Q8N6Y1 951 aaKnown RBP6.3□□□□□ -1.4
VPS35-201ENST00000299138 BPIFB1Q8TDL5 484 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TXNDC15Q96J42 360 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ZNF599Q96NL3 588 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 MECRQ9BV79 373 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CDADC1Q9BWV3 514 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 ZNF69Q9UC07 566 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TESMINQ9Y4I5 508 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CLDN24A6NM45 220 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 TSTD3H0UI37 97 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 CYB561D2O14569 222 aa6.3□□□□□ -1.4
VPS35-201ENST00000299138 UGT1A9O60656 530 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms