RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 LINGO2Q7L985 606 aa9.19□□□□□ -0.94
CUX1-201ENST00000292535 ALYREFQ86V81 257 aaKnown RBP9.19□□□□□ -0.94
CUX1-201ENST00000292535 C12orf40Q86WS4 652 aa9.19□□□□□ -0.94
CUX1-201ENST00000292535 TSEN2Q8NCE0 465 aaKnown RBP9.19□□□□□ -0.94
CUX1-201ENST00000292535 SIRPGQ9P1W8 387 aa9.19□□□□□ -0.94
CUX1-201ENST00000292535 PRPS2P11908 318 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CLCN4P51793 760 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CAPZA1P52907 286 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CAV3P56539 151 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 SNTA1Q13424 505 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ZACNQ401N2 412 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 NCSTNQ92542 709 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ACAT2Q9BWD1 397 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 EIF2B3Q9NR50 452 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 IL17RBQ9NRM6 502 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 PPRC1Q5VV67 1664 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 CCNCP24863 283 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 RBM34P42696 430 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 PRAMEF17Q5VTA0 474 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CRYBG2Q8N1P7 616 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 DENND6BQ8NEG7 585 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CENPNQ96H22 339 aaPredicted RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 KCTD15Q96SI1 283 aaPredicted RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 B3GAT2Q9NPZ5 323 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 AASSQ9UDR5 926 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CREBBPQ92793 2442 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 PSMD10O75832 226 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CTSOP43234 321 aaPredicted RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 YBEYP58557 167 aaPredicted RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 ADGRD2Q7Z7M1 963 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ZNF554Q86TJ5 538 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 WFIKKN2Q8TEU8 576 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 RAB2BQ8WUD1 216 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ART4Q93070 314 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 TBATAQ96M53 351 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 SDHAF3Q9NRP4 125 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ARHGAP23Q9P227 1491 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 TM7SF2O76062 418 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 OR1D2P34982 312 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 DSC2Q02487 901 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ENPP2Q13822 863 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 RBM20Q5T481 1227 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 GPR107Q5VW38 600 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 AMZ2Q86W34 360 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 AGXT2Q9BYV1 514 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 MKLN1Q9UL63 735 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 TNFRSF10BO14763 440 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CYP3A5P20815 502 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 DUSP4Q13115 394 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 LRIF1Q5T3J3 769 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 PQLC1Q8N2U9 271 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 TMEM68Q96MH6 324 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CCDC86Q9H6F5 360 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 ERVK-5Q9HDB9 667 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 C14orf166Q9Y224 244 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 ALG5Q9Y673 324 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ROBO3Q96MS0 1386 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ELOA3DA6NLF2 546 aaPredicted RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 WNT9AO14904 365 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 AIREO43918 545 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 PLGLB1Q02325 96 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ELOA3BQ3SY89 546 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 C3orf33Q6P1S2 294 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CAND1Q86VP6 1230 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 ELOA3Q8NG57 546 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 MAU2Q9Y6X3 613 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CYP4F8P98187 520 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 TARDBPQ13148 414 aaKnown RBP eCLIP9.18□□□□□ -0.949e-7■■■■□ 26.1
CUX1-201ENST00000292535 OR6K2Q8NGY2 324 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 NINJ1Q92982 152 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 NEDD4LQ96PU5 975 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 NUSAP1Q9BXS6 441 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 SLC28A3Q9HAS3 691 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 KCNMB3Q9NPA1 279 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 SPIN1Q9Y657 262 aaPredicted RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 CKAP5Q14008 2032 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ANGPTL1O95841 491 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 GPIP06744 558 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 FSHRP23945 695 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 CDH12P55289 794 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 NTRK3Q16288 839 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 PLEKHG4Q58EX7 1191 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 SDHAF4Q5VUM1 108 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 OLFML1Q6UWY5 402 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 LRRC55Q6ZSA7 311 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ZNF514Q96K75 400 aaPredicted RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 MIPEPQ99797 713 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 SLC35A5Q9BS91 424 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 PET100P0DJ07 73 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 TCEA1P23193 301 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 ZNF41P51814 821 aaPredicted RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 SLC5A3P53794 718 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 ELOAQ14241 798 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 C15orf52Q6ZUT6 534 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 THRSPQ92748 146 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 POLR2J3Q9H1A7 115 aaKnown RBP9.18□□□□□ -0.94
CUX1-201ENST00000292535 ITM2CQ9NQX7 267 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 MPSTP25325 297 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 KCNJ5P48544 419 aa9.18□□□□□ -0.94
CUX1-201ENST00000292535 RAB39AQ14964 217 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms