RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PRDX6P30041 224 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 LIMK2P53671 638 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 ELOAQ14241 798 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TIGD2Q4W5G0 525 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 CUZD1Q86UP6 607 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 GALNT13Q8IUC8 556 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D15Q8TC07 691 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 NCSTNQ92542 709 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 PPM1MQ96MI6 270 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 NDC1Q9BTX1 674 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 ZBTB7AO95365 584 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 HNRNPLP14866 589 aaKnown RBP eCLIP13.72□□□□□ -0.212e-7■■■■□ 24.6
CCDC88A-201ENST00000263630 OR12D2P58182 307 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TARDBPQ13148 414 aaKnown RBP eCLIP13.72□□□□□ -0.214e-6■■■■□ 19.5
CCDC88A-201ENST00000263630 LRRN1Q6UXK5 716 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 GALNT11Q8NCW6 608 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 ZMIZ2Q8NF64 920 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 SULT4A1Q9BR01 284 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 DNAJC18Q9H819 358 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 NPEPPSL1A6NEC2 478 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 M0R233 179 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 ADH1AP07327 375 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 MPIP34949 423 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 UNQ6126/PRO20091Q6UXV3 157 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 LMLNQ96KR4 655 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 A2ML1A8K2U0 1454 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 CLCN4P51793 760 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 UNC93AQ86WB7 457 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 GLB1L3Q8NCI6 653 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 EXOSC8Q96B26 276 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TSNAXQ99598 290 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 DUXAA6NLW8 204 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 E5RJQ4 531 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TSTD3H0UI37 97 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 SEPT4O43236 478 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 OAZ2O95190 189 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 NUDT7P0C024 238 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 CPN2P22792 545 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 S100A7P31151 101 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 CSTF2P33240 577 aaKnown RBP eCLIP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 CTBP2P56545 445 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 SLC26A5P58743 744 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 BST1Q10588 318 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 RPA4Q13156 261 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 MLC1Q15049 377 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 ABHD13Q7L211 337 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TAS1R3Q7RTX0 852 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 SLC37A3Q8NCC5 494 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 CXorf21Q9HAI6 301 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 VWA7Q9Y334 891 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 PCDHB11Q9Y5F2 797 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 MAGEB17A8MXT2 336 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 GNB3P16520 340 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 EDNRAP25101 427 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 PSMA6P60900 246 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TRIM28Q13263 835 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 ATAT1Q5SQI0 421 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 C12orf45Q8N5I9 185 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 DEFB129Q9H1M3 183 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 TAS2R10Q9NYW0 307 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 FAM205AQ6ZU69 1335 aa13.72□□□□□ -0.21
CCDC88A-201ENST00000263630 AGAP5A6NIR3 686 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 SCDO00767 359 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ARL6IP5O75915 188 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 IDSP22304 550 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 SIM2Q14190 667 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 IFI44LQ53G44 452 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 MTFR2Q6P444 385 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 JAGN1Q8N5M9 183 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 FN3KQ9H479 309 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 SH2B3Q9UQQ2 575 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ADAM18Q9Y3Q7 739 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 TIMM13Q9Y5L4 95 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 A8MVJ9 347 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF670-ZNF695F2Z2N8 137 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 SLC37A4O43826 429 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 TRUB2O95900 331 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 RAB4BP61018 213 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 SMARCB1Q12824 385 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 C12orf40Q86WS4 652 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ARL14Q8N4G2 192 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 TNFRSF25Q93038 417 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 TBL1XR1Q9BZK7 514 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 CDH22Q9UJ99 828 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 FRMPD4Q14CM0 1322 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 CXCR1P25024 350 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 SCIMPQ6UWF3 145 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 NATD1Q8N6N6 113 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF611Q8N823 705 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ATG4CQ96DT6 458 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 FUZQ9BT04 418 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ANKHQ9HCJ1 492 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 TMEM100Q9NV29 134 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 NUDT4Q9NZJ9 180 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 POLR1CO15160 346 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 SCAF4O95104 1147 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 IGFBP4P22692 258 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 XKP51811 444 aa13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 ALYREFQ86V81 257 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D16Q8TBP0 767 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms