RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CPSF4O95639 269 aaKnown RBP12.41□□□□□ -0.42
LIG1-201ENST00000263274 ALPLP05186 524 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 MAGP20916 626 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 KPNA1P52294 538 aaPredicted RBP12.41□□□□□ -0.42
LIG1-201ENST00000263274 FPGSQ05932 587 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 KIAA1841Q6NSI8 718 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 FAM117BQ6P1L5 589 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 PTRH1Q86Y79 214 aaKnown RBP12.41□□□□□ -0.42
LIG1-201ENST00000263274 TERB1Q8NA31 727 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 SLC22A17Q8WUG5 538 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 NODALQ96S42 347 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 ZNF382Q96SR6 550 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 SLC52A3Q9NQ40 469 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 FNIP2Q9P278 1114 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 DNMT3LQ9UJW3 386 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 TULP3O75386 442 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 PRLP01236 227 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 ALDH2P05091 517 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 PGRP06401 933 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 BMP1P13497 986 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 ELNP15502 786 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 CDH3P22223 829 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 SUOXP51687 545 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 ACVR1Q04771 509 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 NKG7Q16617 165 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 MOGQ16653 247 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 ADAMTSL2Q86TH1 951 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 SPARTQ8N0X7 666 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 FUBP3Q96I24 572 aaKnown RBP eCLIP12.41□□□□□ -0.42
LIG1-201ENST00000263274 PPP3R2Q96LZ3 170 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 FAM126AQ9BYI3 521 aaPredicted RBP12.41□□□□□ -0.42
LIG1-201ENST00000263274 TBCCD1Q9NVR7 557 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 LRFN2Q9ULH4 789 aa12.41□□□□□ -0.42
LIG1-201ENST00000263274 LOC100130705A0A1B0GUX0 176 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 MTMR11A4FU01 709 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 DRGXA6NNA5 263 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 K7ERQ8 282 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 FUCA1P04066 466 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 ZNF7P17097 686 aaPredicted RBP12.4□□□□□ -0.42
LIG1-201ENST00000263274 S100A3P33764 101 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 MAP2K4P45985 399 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 GNPDA1P46926 289 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 SPCS2Q15005 226 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 PHKG1Q16816 387 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 XKR7Q5GH72 579 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 COQ5Q5HYK3 327 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 THOC7Q6I9Y2 204 aaKnown RBP12.4□□□□□ -0.42
LIG1-201ENST00000263274 DCDC5Q6ZRR9 648 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 ADHFE1Q8IWW8 467 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 TSPEARQ8WU66 669 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 SELENOMQ8WWX9 145 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 RORBQ92753 470 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 DHRS1Q96LJ7 313 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 BRINP2Q9C0B6 783 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 LRTM1Q9HBL6 345 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 KIF17Q9P2E2 1029 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 DNAJB9Q9UBS3 223 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 C3orf18Q9UK00 162 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 GABRQQ9UN88 632 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 TMEM98Q9Y2Y6 226 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 TNPO3Q9Y5L0 923 aaKnown RBP12.4□□□□□ -0.42
LIG1-201ENST00000263274 IGLV3-10A0A075B6K4 115 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 KRT87PA6NCN2 255 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 TSPAN12O95859 305 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 GGT1P19440 569 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 MSH3P20585 1137 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 CRHBPP24387 322 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 MZF1P28698 734 aaPredicted RBP12.4□□□□□ -0.42
LIG1-201ENST00000263274 OPRL1P41146 370 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 FLT3LGP49771 235 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 HSPA14Q0VDF9 509 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 ARTNQ5T4W7 220 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 RSPO2Q6UXX9 243 aaPredicted RBP12.4□□□□□ -0.42
LIG1-201ENST00000263274 SLC24A5Q71RS6 500 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 BTLAQ7Z6A9 289 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 RTN4RL1Q86UN2 441 aaPredicted RBP12.4□□□□□ -0.42
LIG1-201ENST00000263274 LEMD2Q8NC56 503 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 OR7A2PQ8NGA2 310 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 BPIFB1Q8TDL5 484 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 RAB2BQ8WUD1 216 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 ASIC4Q96FT7 647 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 ZIC5Q96T25 663 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 AMBNQ9NP70 447 aa12.4□□□□□ -0.42
LIG1-201ENST00000263274 FUOMA2VDF0 154 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 SERPINB7O75635 380 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 CLPXO76031 633 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 OAZ2O95190 189 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 NADKO95544 446 aaPredicted RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 ANGPTL1O95841 491 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 FADS2O95864 444 aaKnown RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 AQP1P29972 269 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ZFP36L2P47974 494 aaKnown RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 ARHGDIAP52565 204 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 LRRC73Q5JTD7 316 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 RGL4Q8IZJ4 473 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ATG16L2Q8NAA4 619 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 OR13F1Q8NGS4 319 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 MCOLN3Q8TDD5 553 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 MGME1Q9BQP7 344 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 HEPHQ9BQS7 1158 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms