RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 LETMD1Q6P1Q0 360 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 SLC27A1Q6PCB7 646 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 LRRC52Q8N7C0 313 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 PSMG2Q969U7 264 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 FYTTD1Q96QD9 318 aaKnown RBP14.1□□□□□ -0.15
SDC1-201ENST00000254351 MMP28Q9H239 520 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 AGO3Q9H9G7 860 aaKnown RBP14.1□□□□□ -0.15
SDC1-201ENST00000254351 HACD3Q9P035 362 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 PDP1Q9P0J1 537 aaPredicted RBP14.1□□□□□ -0.15
SDC1-201ENST00000254351 CDH9Q9ULB4 789 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 SCN4AP35499 1836 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 SSC5DA1L4H1 1573 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 MCM3APO60318 1980 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 FAM234BA2RU67 622 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 MOXD2PA6NHM9 499 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 H3BRB1 525 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 NIPSNAP2O75323 286 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 FKBP9O95302 570 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 MYL3P08590 195 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 CLCNKBP51801 687 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 CREMQ03060 361 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 SMU1Q2TAY7 513 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 VTCN1Q7Z7D3 282 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 ZFAND4Q86XD8 727 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 ADHFE1Q8IWW8 467 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 TRIM48Q8IWZ4 208 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 A0A0C4DFX4 3053 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 ELOVL7A1L3X0 281 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 PSMD3O43242 534 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 APOA1P02647 267 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 CHRM5P08912 532 aaPredicted RBP14.1□□□□□ -0.15
SDC1-201ENST00000254351 AQP1P29972 269 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 ADCYAP1R1P41586 468 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 ERVPABLB-1P60509 514 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 SLC35A2P78381 396 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 CD83Q01151 205 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 KCTD2Q14681 263 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 GPRIN3Q6ZVF9 776 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 TTC29Q8NA56 475 aaPredicted RBP14.1□□□□□ -0.15
SDC1-201ENST00000254351 GOLM1Q8NBJ4 401 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 STAG3L4Q8TBR4 150 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 UBASH3BQ8TF42 649 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 PHF10Q8WUB8 498 aaKnown RBP14.1□□□□□ -0.15
SDC1-201ENST00000254351 CEP19Q96LK0 163 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 PRKD2Q9BZL6 878 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 ACTL8Q9H568 366 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 MIA3Q5JRA6 1907 aa14.1□□□□□ -0.15
SDC1-201ENST00000254351 LOC110117498-PIK3R3F6TDL0 507 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 PIRO00625 290 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 CSF2P04141 144 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 SLC10A3P09131 477 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 IDH2P48735 452 aaKnown RBP14.09□□□□□ -0.15
SDC1-201ENST00000254351 TGM4P49221 684 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 CASP9P55211 416 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 ABRAXAS2Q15018 415 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 ZMAT1Q5H9K5 638 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 LBX2Q6XYB7 198 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 CDC26Q8NHZ8 85 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 NTAN1Q96AB6 310 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 RHBDF1Q96CC6 855 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 ZNF599Q96NL3 588 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 PAAF1Q9BRP4 392 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 EXOSC4Q9NPD3 245 aaKnown RBP14.09□□□□□ -0.15
SDC1-201ENST00000254351 POLR2AP24928 1970 aaKnown RBP14.09□□□□□ -0.15
SDC1-201ENST00000254351 SIP14410 1827 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 WDR90Q96KV7 1748 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 KMOO15229 486 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 ZW10O43264 779 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 TREHO43280 583 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 CPNE3O75131 537 aaKnown RBP14.09□□□□□ -0.15
SDC1-201ENST00000254351 HOXD8P13378 290 aaPredicted RBP14.09□□□□□ -0.15
SDC1-201ENST00000254351 EDNRBP24530 442 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 DAPP51397 102 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 GABARAPL2P60520 117 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 ZBTB6Q15916 424 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 TBRG1Q3YBR2 411 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 SPATA19Q7Z5L4 167 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 SUN5Q8TC36 379 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 EEF1AKMT1Q8WVE0 214 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 TMEM40Q8WWA1 233 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 TP53INP1Q96A56 240 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 HMCESQ96FZ2 354 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 KCNC2Q96PR1 638 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 USE1Q9NZ43 259 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 MYLKQ15746 1914 aa14.09□□□□□ -0.15
SDC1-201ENST00000254351 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.08□□□□□ -0.15
SDC1-201ENST00000254351 CASTOR2A6NHX0 329 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 STAU1O95793 577 aaKnown RBP14.08□□□□□ -0.15
SDC1-201ENST00000254351 WEE1P30291 646 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 SNRPD2P62316 118 aaKnown RBP14.08□□□□□ -0.15
SDC1-201ENST00000254351 GRIK4Q16099 956 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 PTPRNQ16849 979 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 FAM187BQ17R55 369 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 P3H2Q8IVL5 708 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 ZDHHC21Q8IVQ6 265 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 KLRG1Q96E93 195 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 SP110Q9HB58 689 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 DKK3Q9UBP4 350 aa14.08□□□□□ -0.15
SDC1-201ENST00000254351 WBP11Q9Y2W2 641 aaKnown RBP14.08□□□□□ -0.15
SDC1-201ENST00000254351 C19orf81C9J6K1 198 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms