RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	THOP1	P52888	689 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	AP1S2	P56377	157 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	DMPK	Q09013	629 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	OVGP1	Q12889	678 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	PTK2B	Q14289	1009 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	NFE2L1	Q14494	772 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	PCBP2	Q15366	365 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	PHKG1	Q16816	387 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	PLA2G4E	Q3MJ16	856 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	ARL13A	Q5H913	290 aa	Predicted RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	TJAP1	Q5JTD0	557 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	ANKS6	Q68DC2	871 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	CGB2	Q6NT52	195 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	METTL2B	Q6P1Q9	378 aa	Known RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	TTC23L	Q6PF05	361 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	ENPP7	Q6UWV6	458 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	XKR5	Q6UX68	686 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823		Q6ZSR6	202 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	FRMD7	Q6ZUT3	714 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	DCP2	Q8IU60	420 aa	Known RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	LSMEM2	Q8N112	164 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	TCAIM	Q8N3R3	496 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	LILRA3	Q8N6C8	439 aa	Predicted RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	SEC16B	Q96JE7	1060 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	HIST1H2AH	Q96KK5	128 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	HIST1H2AJ	Q99878	128 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	H2AFJ	Q9BTM1	129 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	GSTO2	Q9H4Y5	243 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	SPATA6	Q9NWH7	488 aa	Predicted RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	UTP6	Q9NYH9	597 aa	Known RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	KLHL14	Q9P2G3	628 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	MOSPD1	Q9UJG1	213 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	HAO1	Q9UJM8	370 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	SUFU	Q9UMX1	484 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	CA5B	Q9Y2D0	317 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	DNAJC16	Q9Y2G8	782 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	FANCM	Q8IYD8	2048 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	NCOR1	O75376	2440 aa		11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	TDRD6	O60522	2096 aa	Known RBP	11.51	□□□□□ -0.57
CLN6-223	ENST00000637823	PRSS38	A1L453	326 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	NCF1B	A6NI72	391 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	NCF1C	A8MVU1	366 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823		H0Y8X5	98 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	MAP3K13	O43283	966 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	SIX3	O95343	332 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	GUCA1C	O95843	209 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	PDGFB	P01127	241 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	NCF1	P14598	390 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	CD27	P26842	260 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	MAP4	P27816	1152 aa	Known RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	ACADL	P28330	430 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	EEF1D	P29692	281 aa	Known RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	ARRB2	P32121	409 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	GGT5	P36269	586 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	HNMT	P50135	292 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	HK2	P52789	917 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	PRKAA1	Q13131	559 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	UNC5D	Q6UXZ4	953 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	CHST15	Q7LFX5	561 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	CACNA2D3	Q8IZS8	1091 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	KIRREL3	Q8IZU9	778 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	FBXO15	Q8NCQ5	510 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	CCDC197	Q8NCU1	140 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	CFAP61	Q8NHU2	1237 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	PIWIL2	Q8TC59	973 aa	Known RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	ZNF483	Q8TF39	744 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	UBTD2	Q8WUN7	234 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	OR1E3	Q8WZA6	343 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	SNX19	Q92543	992 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	RHBDF1	Q96CC6	855 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	MOCOS	Q96EN8	888 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	CCDC138	Q96M89	665 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	UHRF1	Q96T88	793 aa	Predicted RBP	11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	EGFL8	Q99944	293 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	PLCD4	Q9BRC7	762 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	ORAI3	Q9BRQ5	295 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	OR52A5	Q9H2C5	316 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	FGF22	Q9HCT0	170 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	NPHS2	Q9NP85	383 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	ACSS2	Q9NR19	701 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	TM7SF3	Q9NS93	570 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	KLC4	Q9NSK0	619 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	ARL15	Q9NXU5	204 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	INVS	Q9Y283	1065 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	ARL2BP	Q9Y2Y0	163 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	GPSM3	Q9Y4H4	160 aa		11.5	□□□□□ -0.57
CLN6-223	ENST00000637823	TMEM221	A6NGB7	291 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	LRRC14B	A6NHZ5	514 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	PRR19	A6NJB7	356 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	SLCO1B7	G3V0H7	640 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823		M0R296	226 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	TAPBP	O15533	448 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	CHRNG	P07510	517 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	RPS17	P08708	135 aa	Known RBP	11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	ACP5	P13686	325 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	IDS	P22304	550 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	GNPDA1	P46926	289 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	AGTR2	P50052	363 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms