RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PRDX3P30048 256 aaKnown RBP19.66■□□□□ 0.74
CLN3-250ENST00000636839 BDKRB1P46663 353 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 ZXDAP98168 799 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 IFT88Q13099 833 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 SH2D4BQ5SQS7 431 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 KIAA0895LQ68EN5 471 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 CUZD1Q86UP6 607 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 DCBLD1Q8N8Z6 715 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 TMEM79Q9BSE2 394 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 ARL15Q9NXU5 204 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 PCTPQ9UKL6 214 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 SUFUQ9UMX1 484 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 ST14Q9Y5Y6 855 aa19.66■□□□□ 0.74
CLN3-250ENST00000636839 H3BM21 787 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 STX16-NPEPL1H3BU86 382 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 E2F3O00716 465 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 STX16O14662 325 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 FPGTO14772 594 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 APBB3O95704 486 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 ACP5P13686 325 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 RPL10P27635 214 aaKnown RBP19.65■□□□□ 0.74
CLN3-250ENST00000636839 RPL14P50914 215 aaKnown RBP19.65■□□□□ 0.74
CLN3-250ENST00000636839 ARFIP2P53365 341 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 DMWDQ09019 674 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 RASGRP3Q8IV61 690 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 LMNTD1Q8N9Z9 388 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 PDPRQ8NCN5 879 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 ABCF3Q9NUQ8 709 aa19.65■□□□□ 0.74
CLN3-250ENST00000636839 CACNB4O00305 520 aaPredicted RBP19.64■□□□□ 0.74
CLN3-250ENST00000636839 LIN7AO14910 233 aaPredicted RBP19.64■□□□□ 0.74
CLN3-250ENST00000636839 C8GP07360 202 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 CLCQ05315 142 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 CLEC6AQ6EIG7 209 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 C6orf89Q6UWU4 347 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 ENPP7Q6UWV6 458 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 NEK10Q6ZWH5 1172 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 TMEM145Q8NBT3 493 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 SNX19Q92543 992 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 KCNK6Q9Y257 313 aa19.64■□□□□ 0.74
CLN3-250ENST00000636839 CFAP20Q9Y6A4 193 aaKnown RBP19.64■□□□□ 0.74
CLN3-250ENST00000636839 C17orf113A0A1B0GUU1 675 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 PSIP1O75475 530 aaKnown RBP19.64■□□□□ 0.73
CLN3-250ENST00000636839 GNPDA1P46926 289 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 FOXA1P55317 472 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 PFN3P60673 137 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 PRKAA1Q13131 559 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 ANKS6Q68DC2 871 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 HM13Q8TCT9 377 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 ZNF483Q8TF39 744 aaPredicted RBP19.64■□□□□ 0.73
CLN3-250ENST00000636839 OR1E3Q8WZA6 343 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 TSACCQ96A04 125 aaPredicted RBP19.64■□□□□ 0.73
CLN3-250ENST00000636839 PDXPQ96GD0 296 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 PRR11Q96HE9 360 aaPredicted RBP19.64■□□□□ 0.73
CLN3-250ENST00000636839 KCNA7Q96RP8 456 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 NRTNQ99748 197 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 OR52A5Q9H2C5 316 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 RDH14Q9HBH5 336 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 KLC4Q9NSK0 619 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 ZNF225Q9UK10 706 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.64■□□□□ 0.73
CLN3-250ENST00000636839 GPSM3Q9Y4H4 160 aa19.64■□□□□ 0.73
CLN3-250ENST00000636839 EBAG9O00559 213 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 KMOO15229 486 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 S100BP04271 92 aaPredicted RBP19.63■□□□□ 0.73
CLN3-250ENST00000636839 OXTRP30559 389 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 RPS9P46781 194 aaKnown RBP19.63■□□□□ 0.73
CLN3-250ENST00000636839 PYCR3Q53H96 274 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 TSSK4Q6SA08 328 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 Q6ZSR6 202 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 RD3Q7Z3Z2 195 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 ALYREFQ86V81 257 aaKnown RBP19.63■□□□□ 0.73
CLN3-250ENST00000636839 ANKS4BQ8N8V4 417 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 PHC3Q8NDX5 983 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 PYCR2Q96C36 320 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 CDK15Q96Q40 435 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 ORAI3Q9BRQ5 295 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 MID1IP1Q9NPA3 183 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 HAO1Q9UJM8 370 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 K7ESF4 209 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 MATN2O00339 956 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 ZNF217O75362 1048 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 GSTM1P09488 218 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 SERPINB3P29508 390 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 AKT2P31751 481 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 IDH3AP50213 366 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 GSTM4Q03013 218 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 SLC9B1Q4ZJI4 515 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 CWF19L1Q69YN2 538 aaKnown RBP19.63■□□□□ 0.73
CLN3-250ENST00000636839 OXR1Q8N573 874 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 DENND6BQ8NEG7 585 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 OR13H1Q8NG92 308 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 OR52B6Q8NGF0 335 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 HGH1Q9BTY7 390 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 C1QTNF3Q9BXJ4 246 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 NUF2Q9BZD4 464 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 ATG10Q9H0Y0 220 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 WWOXQ9NZC7 414 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 WDR37Q9Y2I8 494 aa19.63■□□□□ 0.73
CLN3-250ENST00000636839 CCNT2O60583 730 aaKnown RBP19.62■□□□□ 0.73
CLN3-250ENST00000636839 ACADLP28330 430 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms