RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ITIH5Q86UX2 942 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 RNF168Q8IYW5 571 aaPredicted RBP12.52□□□□□ -0.4
LINC00540-203ENST00000631321 DCAF4L2Q8NA75 395 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 PJA1Q8NG27 643 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 SLC22A17Q8WUG5 538 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 SH3GL1Q99961 368 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 CLMPQ9H6B4 373 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 IL26Q9NPH9 171 aa12.52□□□□□ -0.4
LINC00540-203ENST00000631321 C2orf78A6NCI8 922 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 TBKBP1A7MCY6 615 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 H0Y626 953 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 K7EPI3 171 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 ARVCFO00192 962 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 SCELO95171 688 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 SLC25A14O95258 325 aaPredicted RBP12.52□□□□□ -0.41
LINC00540-203ENST00000631321 EBLN1P0CF75 366 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 MBL2P11226 248 aaPredicted RBP12.52□□□□□ -0.41
LINC00540-203ENST00000631321 NFKBIAP25963 317 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 ACRV1P26436 265 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 GNPDA1P46926 289 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 PTGR1Q14914 329 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 NKG7Q16617 165 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 RUNDC3AQ59EK9 446 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 RBM48Q5RL73 367 aaKnown RBP12.52□□□□□ -0.41
LINC00540-203ENST00000631321 THAP5Q7Z6K1 395 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 ZDHHC13Q8IUH4 622 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 PLPP6Q8IY26 295 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 ZBTB2Q8N680 514 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 HJURPQ8NCD3 748 aaPredicted RBP12.52□□□□□ -0.41
LINC00540-203ENST00000631321 DNAJB8Q8NHS0 232 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 FNDC8Q8TC99 324 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 USP7Q93009 1102 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 SLC29A3Q9BZD2 475 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 ZFYVE1Q9HBF4 777 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 LATS2Q9NRM7 1088 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 SLC25A37Q9NYZ2 338 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 OPTCQ9UBM4 332 aa12.52□□□□□ -0.41
LINC00540-203ENST00000631321 MANBAO00462 879 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 GREM1O60565 184 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 SEC14L2O76054 403 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 GUCA1CO95843 209 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TRBC1P01850 177 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 POLR2IP36954 125 aaKnown RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 YAP1P46937 504 aaKnown RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 PPP3CCP48454 512 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 NRIP1P48552 1158 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ENTPD1P49961 510 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 EPS8Q12929 822 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 MYBPC3Q14896 1274 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 MAPKAPK3Q16644 382 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TCTN1Q2MV58 587 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 FAM174BQ3ZCQ3 159 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 CACHD1Q5VU97 1274 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TTC23Q5W5X9 447 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ENPP6Q6UWR7 440 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TMEM26Q6ZUK4 368 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 STK32CQ86UX6 486 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 SVOPLQ8N434 492 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 FAM86B1Q8N7N1 296 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 FIG4Q92562 907 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 VN1R3Q9BXE9 311 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 DPY30Q9C005 99 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 IKZF5Q9H5V7 419 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ASB8Q9H765 288 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 LRTM1Q9HBL6 345 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 STARD7Q9NQZ5 370 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 WWOXQ9NZC7 414 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TSR3Q9UJK0 312 aaKnown RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ANGPTL3Q9Y5C1 460 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ELOVL7A1L3X0 281 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 SH3PXD2BA1X283 911 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 GSTA4O15217 222 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ULK1O75385 1050 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ABLIM3O94929 683 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 PGRP06401 933 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 RETP07949 1114 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 HOXB6P17509 224 aaKnown RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 IL1RNP18510 177 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ITGB6P18564 788 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ELK4P28324 431 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 CSKP41240 450 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 RANBP1P43487 201 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 CSNK1DP48730 415 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TMBIM6P55061 237 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 PPP2R2BQ00005 443 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TUBA3CQ13748 450 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ZIK1Q3SY52 487 aaPredicted RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 CDKL4Q5MAI5 379 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 BROXQ5VW32 411 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ATG9BQ674R7 924 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 TTC23LQ6PF05 361 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 ELMSAN1Q6PJG2 1045 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 CLEC4FQ8N1N0 589 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 CBARPQ8N350 705 aaPredicted RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 LIX1Q8N485 282 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 OR10A6Q8NH74 314 aa12.51□□□□□ -0.41
LINC00540-203ENST00000631321 HDAC2Q92769 488 aaKnown RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 POP5Q969H6 163 aaKnown RBP12.51□□□□□ -0.41
LINC00540-203ENST00000631321 CLSTN3Q9BQT9 956 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms