RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 LILRA5A6NI73 299 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 TUBBP07437 444 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 ABHD2P08910 425 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 CD9P21926 228 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 SLC12A2P55011 1212 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 PDAP1Q13442 181 aaKnown RBP18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 KLHL38Q2WGJ6 581 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 GRTP1Q5TC63 336 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 DUS1LQ6P1R4 473 aaKnown RBP18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 TMEM26Q6ZUK4 368 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 SPRED1Q7Z699 444 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 VRK3Q8IV63 474 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 ZFPM2Q8WW38 1151 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 FOPNLQ96NB1 174 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 FERD3LQ96RJ6 166 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 RBBP8Q99708 897 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 SYNDIG1Q9H7V2 258 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 GALPQ9UBC7 116 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 ASF1AQ9Y294 204 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 MED16Q9Y2X0 877 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 IKBKGQ9Y6K9 419 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 KNTC1P50748 2209 aa18.65■□□□□ 0.58
SQSTM1-216ENST00000626660 OPA1O60313 960 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 RPN2P04844 631 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 RPLP0P05388 317 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 CBSLP0DN79 551 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 ENO3P13929 434 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 SAT1P21673 171 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 ACADLP28330 430 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 CBSP35520 551 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 RGS4P49798 205 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 EPHA4P54764 986 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 CDKN2DP55273 166 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 OR1D5P58170 312 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 GPR18Q14330 331 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 GBX1Q14549 363 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 EFTUD2Q15029 972 aaKnown RBP eCLIP18.64■□□□□ 0.576e-7■■■□□ 17.9
SQSTM1-216ENST00000626660 PLCL1Q15111 1095 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 UBAP2Q5T6F2 1119 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 UNC5DQ6UXZ4 953 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 ZNF761Q86XN6 746 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 OR10G6Q8NH81 332 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 UHMK1Q8TAS1 419 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 CD200R1Q8TD46 325 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 MRRFQ96E11 262 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 AHCYL2Q96HN2 611 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 TXLNGYQ9BZA5 131 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 ZMYND15Q9H091 742 aa18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 TRIT1Q9H3H1 467 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-216ENST00000626660 EIF3FO00303 357 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 RIPK2O43353 540 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 KDM1AO60341 852 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 DKK1O94907 266 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 FDXRP22570 491 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 LIMK2P53671 638 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 GPLD1P80108 840 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 ABRQ12979 859 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 UAP1Q16222 522 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 AMZ1Q400G9 498 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 ACSBG2Q5FVE4 666 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 LRRC8EQ6NSJ5 796 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 DHRS13Q6UX07 377 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 TBC1D21Q8IYX1 336 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 PHC3Q8NDX5 983 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 CFAP61Q8NHU2 1237 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 GIMAP7Q8NHV1 300 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 TSPAN17Q96FV3 270 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 GFM1Q96RP9 751 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 SLC30A3Q99726 388 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 MCMBPQ9BTE3 642 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 PARD6BQ9BYG5 372 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 LRRN3Q9H3W5 708 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 EPB41L1Q9H4G0 881 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 KIR3DX1Q9H7L2 352 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 RRAGDQ9NQL2 400 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 POLG2Q9UHN1 485 aa18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 TSR3Q9UJK0 312 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-216ENST00000626660 PRAMEF33A0A0G2JMD5 474 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 B4GAT1O43505 415 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 INHBAP08476 426 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 MAPK9P45984 424 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 CCL7P80098 99 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 POU4F1Q01851 419 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 SPIDRQ14159 915 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 ST3GAL2Q16842 350 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 EMBQ6PCB8 327 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 TTC23LQ6PF05 361 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 NEK10Q6ZWH5 1172 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 TAOK1Q7L7X3 1001 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 PIM3Q86V86 326 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 CPNE9Q8IYJ1 553 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 ACVR1CQ8NER5 493 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 UBLCP1Q8WVY7 318 aaPredicted RBP18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 ADAMTS14Q8WXS8 1223 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 GPR22Q99680 433 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 OLFM1Q99784 485 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 HGH1Q9BTY7 390 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 SLC24A2Q9UI40 661 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 SLC39A10Q9ULF5 831 aa18.62■□□□□ 0.57
SQSTM1-216ENST00000626660 MTO1Q9Y2Z2 717 aaKnown RBP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms