RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GOLGA8DPQ0D2H9 430 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 KCNC3Q14003 757 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 C15orf32Q32M92 178 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 MOGAT2Q3SYC2 334 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 GCNT6Q5T4J0 391 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 INO80CQ6PI98 192 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-208ENST00000625916 KRTAP11-1Q8IUC1 163 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 TICAM1Q8IUC6 712 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 PRICKLE1Q96MT3 831 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-208ENST00000625916 RTN4RQ9BZR6 473 aa2.34□□□□□ -2.03
SCN1A-208ENST00000625916 TEX10Q9NXF1 929 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-208ENST00000625916 KDM3AQ9Y4C1 1321 aa2.34□□□□□ -2.04
SCN1A-208ENST00000625916 ARHGEF40Q8TER5 1519 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 TMEM8BA6NDV4 472 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 ACOD1A6NK06 481 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 ASB14A6NK59 587 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 HCRTR2O43614 444 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 GPC4O75487 556 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 CA4P22748 312 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 CA6P23280 308 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 ICAM3P32942 547 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 HALP42357 657 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 GPR143P51810 404 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 TMEM50BP56557 158 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 RPL7AP62424 266 aaKnown RBP2.33□□□□□ -2.04
SCN1A-208ENST00000625916 DLK1P80370 383 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 GRAMD1BQ3KR37 738 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 FAM109BQ6ICB4 259 aaPredicted RBP2.33□□□□□ -2.04
SCN1A-208ENST00000625916 GALNT5Q7Z7M9 940 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 TSPAN33Q86UF1 283 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 KCNMB4Q86W47 210 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 MARCH9Q86YJ5 346 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 TMEM116Q8NCL8 245 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 TRPC4APQ8TEL6 797 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 SMAP2Q8WU79 429 aaPredicted RBP2.33□□□□□ -2.04
SCN1A-208ENST00000625916 ST8SIA4Q92187 359 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 A4GALTQ9NPC4 353 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 SMC4Q9NTJ3 1288 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 TAS2R10Q9NYW0 307 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 ARHGAP26Q9UNA1 814 aa2.33□□□□□ -2.04
SCN1A-208ENST00000625916 A0A1W2PQF6 199 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 PLEKHD1A6NEE1 506 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 C15orf61A6NNL5 157 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 SRRM5B3KS81 715 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 E9PI62 339 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 OGG1O15527 345 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 HOXC11O43248 304 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 PIP5K1CO60331 668 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 SPARCP09486 303 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 UBL4AP11441 157 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 HSD3B1P14060 373 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 CYP2A7P20853 494 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 PIK3R1P27986 724 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 LEPRP48357 1165 aaKnown RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 RHBDL3P58872 404 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 HERV-K104P61576 105 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 CYCSP99999 105 aaKnown RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 ZFP36L1Q07352 338 aaKnown RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 KLHL26Q53HC5 615 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 FAM166AQ6J272 317 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 SLC47A2Q86VL8 602 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 ZNF354CQ86Y25 554 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 ARMC8Q8IUR7 673 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 TMTC2Q8N394 836 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 FGFRL1Q8N441 504 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 CPSF7Q8N684 471 aaKnown RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 MAPKAPK5-AS1Q8N8E1 139 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 OR10G8Q8NGN5 311 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 VANGL1Q8TAA9 524 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 HTRA1Q92743 480 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 ZKSCAN4Q969J2 545 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 RFT1Q96AA3 541 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 MTERF3Q96E29 417 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 ABHD6Q9BV23 337 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 POLR1BQ9H9Y6 1135 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 PNMA2Q9UL42 364 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 GRID1Q9ULK0 1009 aa2.32□□□□□ -2.04
SCN1A-208ENST00000625916 SOS1Q07889 1333 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-208ENST00000625916 MPTX1A8MV57 137 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 TGFB1I1O43294 461 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 LDHAP00338 332 aaKnown RBP2.31□□□□□ -2.04
SCN1A-208ENST00000625916 ACADLP28330 430 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 PBX3P40426 434 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 GALCP54803 685 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 LY6DQ14210 128 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 ACSM2BQ68CK6 577 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 CYP26C1Q6V0L0 522 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 Q6ZVH6 145 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 KIRREL3Q8IZU9 778 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.31□□□□□ -2.04
SCN1A-208ENST00000625916 NUP37Q8NFH4 326 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 METTL6Q8TCB7 284 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 TOMM40LQ969M1 308 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 SLC45A3Q96JT2 553 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 DDOQ99489 341 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 ARPC5LQ9BPX5 153 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 HGH1Q9BTY7 390 aa2.31□□□□□ -2.04
SCN1A-208ENST00000625916 SDR39U1Q9NRG7 319 aaPredicted RBP2.31□□□□□ -2.04
SCN1A-208ENST00000625916 RRP7BPQ9NSQ0 103 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms