RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 RIC8BQ9NVN3 520 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 ITM2BQ9Y287 266 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 TNPO3Q9Y5L0 923 aaKnown RBP10.42□□□□□ -0.74
CUX1-221ENST00000622516 A0A1B0GTW7 788 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 TMEM202A6NGA9 273 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 SAC3D1A6NKF1 404 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 BBIP1A8MTZ0 92 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 UPK3BL1B0FP48 263 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 UPK3BL2E5RIL1 263 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 INPP4BO15327 924 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 VPS4BO75351 444 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 OTCP00480 354 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 C8BP07358 591 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 GRIA2P42262 883 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 SPINT3P49223 89 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 HTRA4P83105 476 aaPredicted RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 CREMQ03060 361 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 LIPEQ05469 1076 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 GPR33Q49SQ1 333 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 NANOGP8Q6NSW7 305 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 CYP20A1Q6UW02 462 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 GET4Q7L5D6 327 aaPredicted RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 NECAB2Q7Z6G3 386 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 MINDY1Q8N5J2 469 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 KRTCAP2Q8N6L1 136 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 OR2T34Q8NGX1 318 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 OR2T3Q8NH03 318 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 PIP4K2CQ8TBX8 421 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 CLP1Q92989 425 aaKnown RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 TMEM125Q96AQ2 219 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 HOPXQ9BPY8 73 aaPredicted RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 ALG2Q9H553 416 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 NANOGQ9H9S0 305 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 GID8Q9NWU2 228 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ZDHHC3Q9NYG2 299 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ZNF490Q9ULM2 529 aaPredicted RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 PDE10AQ9Y233 779 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 C15orf38-AP3S2A0A0A6YYH1 394 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 TCRBV3S1A0A5B6 114 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ENO4A6NNW6 628 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 CTSLP07711 333 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ZNF26P17031 533 aaPredicted RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 RECQLP46063 649 aaPredicted RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 GSK3BP49841 420 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 CAMK1Q14012 370 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 UGT2A3Q6UWM9 527 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 HACD2Q6Y1H2 254 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 UBE2R2Q712K3 238 aaPredicted RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 ARPINQ7Z6K5 226 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 TICAM1Q8IUC6 712 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 LILRA3Q8N6C8 439 aaPredicted RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 SPPL3Q8TCT6 385 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ULK4Q96C45 1275 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 CERS4Q9HA82 394 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 CHCHD3Q9NX63 227 aaKnown RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 ABCD2Q9UBJ2 740 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 PCDHA9Q9Y5H5 950 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ATG2BQ96BY7 2078 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 A0A1W2PQ67 120 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ARPC2O15144 300 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 EFCAB14O75071 495 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 SH3BGRLO75368 114 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ULK1O75385 1050 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 SEC22BO75396 215 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 STK16O75716 305 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 STAMBPO95630 424 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 B3GALT4O96024 378 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 HSPA8P11142 646 aaKnown RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 POLR2EP19388 210 aaKnown RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 ITPKAP23677 461 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 VIPR2P41587 438 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 TRAP1Q12931 704 aaKnown RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 TBCELQ5QJ74 424 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 RGL4Q8IZJ4 473 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 ITFG1Q8TB96 612 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 LYSMD1Q96S90 227 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 SEPHS2Q99611 448 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 BRINP2Q9C0B6 783 aa10.41□□□□□ -0.74
CUX1-221ENST00000622516 MRPL40Q9NQ50 206 aaKnown RBP10.41□□□□□ -0.74
CUX1-221ENST00000622516 GRXCR1A8MXD5 290 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 PLK4O00444 970 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 ATP6V1B1P15313 513 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 EPB42P16452 691 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 CEBPBP17676 345 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 NAT1P18440 290 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 RPL10P27635 214 aaKnown RBP10.4□□□□□ -0.74
CUX1-221ENST00000622516 SLC7A1P30825 629 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 BMPR1AP36894 532 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 RPS6KA3P51812 740 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 PRKG2Q13237 762 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 GRIN2CQ14957 1233 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 CYP51A1Q16850 503 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 C12orf40Q86WS4 652 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 SFTPA1Q8IWL2 248 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 CBARPQ8N350 705 aaPredicted RBP10.4□□□□□ -0.74
CUX1-221ENST00000622516 LMNTD1Q8N9Z9 388 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 ADCY4Q8NFM4 1077 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 MCCC1Q96RQ3 725 aaPredicted RBP10.4□□□□□ -0.74
CUX1-221ENST00000622516 P2RY13Q9BPV8 354 aa10.4□□□□□ -0.74
CUX1-221ENST00000622516 KCTD14Q9BQ13 255 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms