RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CFAP54Q96N23 3096 aa19.26■□□□□ 0.67
UPF3A-211ENST00000618700 GOLGA4Q13439 2230 aaKnown RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 LDOC1O95751 146 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 CBSLP0DN79 551 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 ENO3P13929 434 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 ZNF37AP17032 561 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 XRCC1P18887 633 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 CNTFP26441 200 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 CBSP35520 551 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 SLC19A1P41440 591 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 RPIAP49247 311 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 CSRP3P50461 194 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 ZNF460Q14592 562 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 USP10Q14694 798 aaKnown RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 NR0B2Q15466 257 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 BEND6Q5SZJ8 279 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 MROH9Q5TGP6 573 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 ADGRD1Q6QNK2 874 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 PAQR3Q6TCH7 311 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 TAOK1Q7L7X3 1001 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 TDRPQ86YL5 185 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 ARL14Q8N4G2 192 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 MAPK15Q8TD08 544 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 ISL2Q96A47 359 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 TSPAN17Q96FV3 270 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 CNDP2Q96KP4 475 aaKnown RBP19.25■□□□□ 0.67
UPF3A-211ENST00000618700 FTSJ1Q9UET6 329 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 PADI4Q9UM07 663 aa19.25■□□□□ 0.67
UPF3A-211ENST00000618700 TRBV23OR9-2A0A075B6M9 112 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 IFRD1O00458 451 aaPredicted RBP19.24■□□□□ 0.67
UPF3A-211ENST00000618700 TSPAN12O95859 305 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 MYF5P13349 255 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 SAT1P21673 171 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 RASA2Q15283 850 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 DUS1LQ6P1R4 473 aaKnown RBP19.24■□□□□ 0.67
UPF3A-211ENST00000618700 TMEM207Q6UWW9 146 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 NEK10Q6ZWH5 1172 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 ZNF438Q7Z4V0 828 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 SLC9B2Q86UD5 537 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 AVL9Q8NBF6 648 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 OR2W6PQ8NHA6 318 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 CDC6Q99741 560 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 IMP3Q9NV31 184 aaKnown RBP19.24■□□□□ 0.67
UPF3A-211ENST00000618700 EURLQ9NYK6 297 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 PSMC3IPQ9P2W1 217 aaPredicted RBP19.24■□□□□ 0.67
UPF3A-211ENST00000618700 CPNE7Q9UBL6 633 aa19.24■□□□□ 0.67
UPF3A-211ENST00000618700 CDV3Q9UKY7 258 aaKnown RBP19.24■□□□□ 0.67
UPF3A-211ENST00000618700 CFAP20Q9Y6A4 193 aaKnown RBP19.24■□□□□ 0.67
UPF3A-211ENST00000618700 EME2A4GXA9 379 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-211ENST00000618700 NUDT21O43809 227 aaKnown RBP19.23■□□□□ 0.67
UPF3A-211ENST00000618700 KRT38O76015 456 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 ALDOAP04075 364 aaKnown RBP19.23■□□□□ 0.67
UPF3A-211ENST00000618700 MPC1LP0DKB6 136 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 STMN1P16949 149 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 CKMT2P17540 419 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 CSRP1P21291 193 aaKnown RBP19.23■□□□□ 0.67
UPF3A-211ENST00000618700 MAGEA12P43365 314 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 SLC12A2P55011 1212 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 RAB10P61026 200 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 HHEXQ03014 270 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 NR1D2Q14995 579 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 GUSBP11Q6P575 273 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 CMC1Q7Z7K0 106 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 RASGRP3Q8IV61 690 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 EEF1AKMT1Q8WVE0 214 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 TFGQ92734 400 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-211ENST00000618700 CXorf40BQ96DE9 158 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 SLC40A1Q9NP59 571 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-211ENST00000618700 HEBP2Q9Y5Z4 205 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 NFS1Q9Y697 457 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 RNF215Q9Y6U7 377 aa19.23■□□□□ 0.67
UPF3A-211ENST00000618700 PRAMEF33A0A0G2JMD5 474 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 PHGDHO43175 533 aaKnown RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 MATN4O95460 622 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 SNRPAP09012 282 aaKnown RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 H2AFXP16104 143 aaPredicted RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 GLB1P16278 677 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 ACP1P24666 158 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 NDUFS1P28331 727 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 ID4P47928 161 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 RGS4P49798 205 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 SERPINB8P50452 374 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 RSPO4Q2I0M5 234 aaPredicted RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 LRRC8EQ6NSJ5 796 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 UNC5DQ6UXZ4 953 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 CYHR1Q6ZMK1 362 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 PIWIL4Q7Z3Z4 852 aaKnown RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 GLRX5Q86SX6 157 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 TRIM48Q8IWZ4 208 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 RBM12BQ8IXT5 1001 aaKnown RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 CNPY4Q8N129 248 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 DEFB124Q8NES8 71 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 OR6C4Q8NGE1 309 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 EPS8L3Q8TE67 593 aaKnown RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 LINGO1Q96FE5 620 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 STN1Q9H668 368 aaKnown RBP19.22■□□□□ 0.67
UPF3A-211ENST00000618700 UCK1Q9HA47 277 aa19.22■□□□□ 0.67
UPF3A-211ENST00000618700 SNX15Q9NRS6 342 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms