RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ELK4P28324 431 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 HTR7P34969 479 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 HERVK_113P63132 956 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 DDX39BQ13838 428 aaKnown RBP14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 Q6ZVU0 165 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 SLC22A15Q8IZD6 547 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 TMEM74Q96NL1 305 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 MGME1Q9BQP7 344 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 ERVK-6Q9BXR3 956 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 DGCR6LQ9BY27 220 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 CNOT11Q9UKZ1 510 aaKnown RBP14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 PRSS21Q9Y6M0 314 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 MYO16Q9Y6X6 1858 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 H2AFYO75367 372 aaKnown RBP14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 CD160O95971 181 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 ZDHHC11BP0C7U3 371 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 MTHFD2P13995 350 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 LSM3P62310 102 aaKnown RBP14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 PIGFQ07326 219 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 TMEM150AQ86TG1 271 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 CLYBLQ8N0X4 340 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 BEND7Q8N7W2 519 aaPredicted RBP14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 TNIP2Q8NFZ5 429 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 POF1BQ8WVV4 589 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 SCAMP4Q969E2 229 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 SEPHS2Q99611 448 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 IL37Q9NZH6 218 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 ERGIC3Q9Y282 383 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 TMEM98Q9Y2Y6 226 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 CHD9Q3L8U1 2897 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 TSC2P49815 1807 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 AQP9O43315 295 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 S100BP04271 92 aaPredicted RBP14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 OPRL1P41146 370 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 LMAN2Q12907 356 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 CHRNA6Q15825 494 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 SLC22A9Q8IVM8 553 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 LKAAEAR1Q8TD35 194 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 SGCDQ92629 289 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 PPP1R2P1Q96PQ5 205 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 KLF16Q9BXK1 252 aaPredicted RBP14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 SYTL2Q9HCH5 934 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 SPAG4Q9NPE6 437 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 CACNA2D2Q9NY47 1150 aa14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 CXXC1Q9P0U4 656 aaPredicted RBP14.23□□□□□ -0.13
SHROOM1-208ENST00000617339 SNRPB2P08579 225 aaKnown RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 MTHFD1P11586 935 aaKnown RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 MYOGP15173 224 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 EFNA1P20827 205 aaPredicted RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 HNF1BP35680 557 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 POLR2IP36954 125 aaKnown RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 HMGCS1Q01581 520 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 PPP1R8Q12972 351 aaKnown RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 KCNJ8Q15842 424 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 CPSF6Q16630 551 aaKnown RBP eCLIP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 RABL3Q5HYI8 236 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 AFTPHQ6ULP2 937 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 GRASPQ7Z6J2 395 aaPredicted RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 YAF2Q8IY57 180 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 FOXJ1Q92949 421 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 ZFYVE19Q96K21 471 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 TEX37Q96LM6 180 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 CROTQ9UKG9 612 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 SYNCRIPO60506 623 aaKnown RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 SULT1C4O75897 302 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 C8BP07358 591 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 FDXRP22570 491 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 ALDH4A1P30038 563 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 PPM1AP35813 382 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 HTR6P50406 440 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 TPTEP56180 551 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 SF3B4Q15427 424 aaKnown RBP eCLIP14.22□□□□□ -0.134e-10■■■■□ 25.6
SHROOM1-208ENST00000617339 TAF1AQ15573 450 aaPredicted RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 DGKKQ5KSL6 1271 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 MIER2Q8N344 545 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 STARD8Q92502 1023 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 MYO19Q96H55 970 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 CCDC138Q96M89 665 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 C2orf49Q9BVC5 232 aaPredicted RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 GNPTGQ9UJJ9 305 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 WNT6Q9Y6F9 365 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 OR2AG2A6NM03 316 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 PABPC1P11940 636 aaKnown RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 IGFBP4P22692 258 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 DGKQP52824 942 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 UFM1P61960 85 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 PPP4R4Q6NUP7 873 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 DSG4Q86SJ6 1040 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 EPHX4Q8IUS5 362 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 TOP1MTQ969P6 601 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 SLC46A2Q9BY10 475 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 TUBB1Q9H4B7 451 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 EPS8L2Q9H6S3 715 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 NLE1Q9NVX2 485 aaPredicted RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 SUCOQ9UBS9 1254 aaKnown RBP14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 REV3LO60673 3130 aa14.22□□□□□ -0.13
SHROOM1-208ENST00000617339 NRP2O60462 931 aa14.21□□□□□ -0.13
SHROOM1-208ENST00000617339 SNAP29O95721 258 aa14.21□□□□□ -0.13
SHROOM1-208ENST00000617339 CAPN1P07384 714 aa14.21□□□□□ -0.13
SHROOM1-208ENST00000617339 TNK2Q07912 1038 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms