RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PGPEP1LA6NFU8 196 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 STMND1H3BQB6 276 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 H3BUI4 141 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SH2B2O14492 632 aaPredicted RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 LRRTM2O43300 516 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 KRT86O43790 486 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CACNG3O60359 315 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 USO1O60763 962 aaKnown RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 PIAS2O75928 621 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CBX6O95503 412 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CHEK2O96017 543 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 DNTTP04053 509 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CISD3P0C7P0 127 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 KITP10721 976 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 ODC1P11926 461 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 TYRP14679 529 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 ALOX12P18054 663 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CYP2F1P24903 491 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CD82P27701 267 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CTNNA1P35221 906 aaKnown RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 HARS2P49590 506 aaKnown RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 PAPOLAP51003 745 aaKnown RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 COPB1P53618 953 aaKnown RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 GALCP54803 685 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SUMO3P55854 103 aaPredicted RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 RPS14P62263 151 aaKnown RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 HOXA4Q00056 320 aaPredicted RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SPAG1Q07617 926 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SMARCB1Q12824 385 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 ENPP2Q13822 863 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 KCNJ12Q14500 433 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF234Q14588 700 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 TIGD6Q17RP2 521 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 PCID2Q5JVF3 399 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 ATP1A1-AS1Q5TC04 95 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 NAPEPLDQ6IQ20 393 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SERPINA13PQ6UXR4 307 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 TPGS1Q6ZTW0 290 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CHSY1Q86X52 802 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CPOQ8IVL8 374 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 PHC2Q8IXK0 858 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 NRSN1Q8IZ57 195 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 NDUFAF2Q8N183 169 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 FAM109AQ8N4B1 249 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 NANOGP1Q8N7R0 232 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 ANKRD52Q8NB46 1076 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CHDHQ8NE62 594 aaPredicted RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 EXOC6Q8TAG9 804 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 FAM71BQ8TC56 605 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 NSMCE1Q8WV22 266 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 KAT5Q92993 513 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 OTUB2Q96DC9 234 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 C19orf60Q96EN9 201 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SLC35A4Q96G79 324 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 CLPTM1LQ96KA5 538 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 PPP1R13BQ96KQ4 1090 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SLITRK1Q96PX8 696 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 BAG1Q99933 345 aaPredicted RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 LXNQ9BS40 222 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 BBS2Q9BXC9 721 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 GLT8D2Q9H1C3 349 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SAYSD1Q9NPB0 183 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 PLSCR4Q9NRQ2 329 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 LMBRD1Q9NUN5 540 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 TMLHEQ9NVH6 421 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 ORC3Q9UBD5 711 aaPredicted RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 LRWD1Q9UFC0 647 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.38□□□□□ -1.71
LINC00540-201ENST00000611481 NCKAP1Q9Y2A7 1128 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 TLN2Q9Y4G6 2542 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 SCN8AQ9UQD0 1980 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 DCHS2Q6V1P9 2916 aa4.38□□□□□ -1.71
LINC00540-201ENST00000611481 POLEQ07864 2286 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 MYH10P35580 1976 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 TNRC6AQ8NDV7 1962 aaKnown RBP4.37□□□□□ -1.71
LINC00540-201ENST00000611481 EME2A4GXA9 379 aaPredicted RBP4.37□□□□□ -1.71
LINC00540-201ENST00000611481 NEMP2A6NFY4 417 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 LRRC72A6NJI9 287 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 SCAMP1O15126 338 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 P4HA2O15460 535 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 MAGEC1O60732 1142 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 INMTO95050 263 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 F9P00740 461 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 FAM200BP0CF97 657 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 IRF1P10914 325 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 ATICP31939 592 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 LINC00205P59089 165 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 PLIN5Q00G26 463 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 MYL7Q01449 175 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 TRDNQ13061 729 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 CTTNQ14247 550 aaKnown RBP4.37□□□□□ -1.71
LINC00540-201ENST00000611481 KRT32Q14532 448 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 POM121L1PQ3SYA9 428 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 HECTD3Q5T447 861 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 KRT74Q7RTS7 529 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 BIVMQ86UB2 503 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 SCN4BQ8IWT1 228 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 C4orf19Q8IY42 314 aa4.37□□□□□ -1.71
LINC00540-201ENST00000611481 DCP1BQ8IZD4 617 aaKnown RBP4.37□□□□□ -1.71
LINC00540-201ENST00000611481 THEM5Q8N1Q8 247 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms