RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 CSHL1Q14406 222 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 ZNF460Q14592 562 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 AGERQ15109 404 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 CTSL3PQ5NE16 218 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 TCHHL1Q5QJ38 904 aaPredicted RBP11.49□□□□□ -0.57
VRK3-223ENST00000601341 LDLRAP1Q5SW96 308 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 NXNQ6DKJ4 435 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 KIAA1161Q6NSJ0 714 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 UGT3A1Q6NUS8 523 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 NEK5Q6P3R8 708 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 MACC1Q6ZN28 852 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 CLDN19Q8N6F1 224 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 ICA1LQ8NDH6 482 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 AGR3Q8TD06 166 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 HMGB4Q8WW32 186 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 GLYATL1Q969I3 302 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 ASB9Q96DX5 294 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 DCUN1D1Q96GG9 259 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 CDRT15Q96T59 188 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 SLC25A23Q9BV35 468 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 BOCQ9BWV1 1114 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 SYTL2Q9HCH5 934 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 PREBQ9HCU5 417 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 TMPRSS11EQ9UL52 423 aa11.49□□□□□ -0.57
VRK3-223ENST00000601341 COL6A3P12111 3177 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 STK25O00506 426 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 TRIM38O00635 465 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 VCLP18206 1134 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 AKT1P31749 480 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 GPR1P46091 355 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 THOP1P52888 689 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 PGGT1BP53609 377 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 HERVK_113P63132 956 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 TIAL1Q01085 375 aaKnown RBP eCLIP11.48□□□□□ -0.57
VRK3-223ENST00000601341 SGCGQ13326 291 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 MAP7D1Q3KQU3 841 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 RAET1GQ6H3X3 334 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 CUZD1Q86UP6 607 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 PHYKPLQ8IUZ5 450 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 ST13P4Q8IZP2 240 aaPredicted RBP11.48□□□□□ -0.57
VRK3-223ENST00000601341 GJD3Q8N144 294 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 DDHD1Q8NEL9 900 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 FLCNQ8NFG4 579 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 RCN3Q96D15 328 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 DUS3LQ96G46 650 aaKnown RBP11.48□□□□□ -0.57
VRK3-223ENST00000601341 CATSPER2Q96P56 530 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 ERVK-6Q9BXR3 956 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 OSBPL6Q9BZF3 934 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 SHCBP1LQ9BZQ2 653 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 FOXQ1Q9C009 403 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D17Q9HA65 648 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 NDUFA13Q9P0J0 144 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 TRMT6Q9UJA5 497 aaKnown RBP11.48□□□□□ -0.57
VRK3-223ENST00000601341 RAB26Q9ULW5 256 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 MED16Q9Y2X0 877 aa11.48□□□□□ -0.57
VRK3-223ENST00000601341 OAS3Q9Y6K5 1087 aaKnown RBP11.48□□□□□ -0.57
VRK3-223ENST00000601341 SCN8AQ9UQD0 1980 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3DA0A087WVF3 549 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3IA0A087WXS9 549 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3EA0A087X179 549 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3KA0A087X1G2 549 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3FA6NER0 549 aaPredicted RBP11.47□□□□□ -0.57
VRK3-223ENST00000601341 BBIP1A8MTZ0 92 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3LB9A6J9 549 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 ACOT8O14734 319 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 UBDO15205 165 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 SMIM24O75264 130 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 NIPSNAP2O75323 286 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 SLC25A14O95258 325 aaPredicted RBP11.47□□□□□ -0.57
VRK3-223ENST00000601341 OR56A5P0C7T3 313 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3HP0C7X1 549 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 MSH3P20585 1137 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 MRPL19P49406 292 aaKnown RBP11.47□□□□□ -0.57
VRK3-223ENST00000601341 TPMTP51580 245 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 B4GALNT1Q00973 533 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 GAS6Q14393 721 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TRIP10Q15642 601 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 PDCD2Q16342 344 aaPredicted RBP11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3GQ6DHY5 549 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3CQ6IPX1 549 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 ISCA2Q86U28 154 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 FAM124AQ86V42 546 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 PIM3Q86V86 326 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TICAM1Q8IUC6 712 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TBC1D3Q8IZP1 549 aaPredicted RBP11.47□□□□□ -0.57
VRK3-223ENST00000601341 PGBD3Q8N328 593 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 MARVELD2Q8N4S9 558 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 TSTD1Q8NFU3 115 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 GPR21Q99679 349 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 C1QTNF7Q9BXJ2 289 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 C1QTNF2Q9BXJ5 285 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 BTBD1Q9H0C5 482 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 EPB41L1Q9H4G0 881 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 GSTO2Q9H4Y5 243 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 ITM2CQ9NQX7 267 aa11.47□□□□□ -0.57
VRK3-223ENST00000601341 PRSS51A0A1B0GVH4 220 aa11.46□□□□□ -0.57
VRK3-223ENST00000601341 A0A1W2PQU0 124 aa11.46□□□□□ -0.57
VRK3-223ENST00000601341 PRR23AA6NEV1 266 aa11.46□□□□□ -0.57
VRK3-223ENST00000601341 QSOX1O00391 747 aa11.46□□□□□ -0.57
VRK3-223ENST00000601341 RNGTTO60942 597 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms