RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 BOD1L1Q8NFC6 3051 aa9.52□□□□□ -0.88
VRK3-216ENST00000599342 TRBV5-4A0A0C4DH59 114 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 SLC9B1P1A6NJY1 282 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 C2orf74A8MZ97 194 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 TMEM150CB9EJG8 249 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 BTN3A1O00481 513 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 AP2A2O94973 939 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 METTL18O95568 372 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 FTH1P02794 183 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 NR1D1P20393 614 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 CYP2A7P20853 494 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 NSG1P42857 185 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 PREPP48147 710 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 LMAN1P49257 510 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 CDKN1CP49918 316 aaPredicted RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 GDF10P55107 478 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 RPS18P62269 152 aaKnown RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 GPS2Q13227 327 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 KLF1Q13351 362 aaPredicted RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 UGT8Q16880 541 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 SEL1L2Q5TEA6 688 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 FBXO38Q6PIJ6 1188 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 ASB18Q6ZVZ8 466 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 LINC00523Q86TU6 105 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 AMIGO1Q86WK6 493 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 TAB3Q8N5C8 712 aaPredicted RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 DNAAF3Q8N9W5 541 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 OR52E1Q8NGJ3 308 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 TFGQ92734 400 aaPredicted RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 N4BP2L2Q92802 583 aaPredicted RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 CLIP3Q96DZ5 547 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 CDKN2AIPNLQ96HQ2 116 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 PPM1MQ96MI6 270 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 RUFY1Q96T51 708 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 TTC1Q99614 292 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 TFB2MQ9H5Q4 396 aaKnown RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 PIH1D1Q9NWS0 290 aaKnown RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 TLK1Q9UKI8 766 aa9.52□□□□□ -0.89
VRK3-216ENST00000599342 HELZ2Q9BYK8 2649 aaKnown RBP9.52□□□□□ -0.89
VRK3-216ENST00000599342 CCDC78A2IDD5 438 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 GOLGA6L6A8MZA4 724 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 E7EQ34 232 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 E7EVH7 732 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 F8W8V4 182 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 LIN7AO14910 233 aaPredicted RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 DDX3YO15523 660 aaKnown RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 PRSS56P0CW18 603 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 MSNP26038 577 aaKnown RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 PDHA2P29803 388 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 PRDX3P30048 256 aaKnown RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 FOXK1P85037 733 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 CDH17Q12864 832 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 PRKG2Q13237 762 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 SEMA5AQ13591 1074 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 ITIH4Q14624 930 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 DBN1Q16643 649 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 SYTL3Q4VX76 610 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 IZUMO3Q5VZ72 239 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 PPP1R21Q6ZMI0 780 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 APLFQ8IW19 511 aaPredicted RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 CLDN19Q8N6F1 224 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 PHC3Q8NDX5 983 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 SLC35B2Q8TB61 432 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 ELMO1Q92556 727 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 LRFN5Q96NI6 719 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 DESI2Q9BSY9 194 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 CHST8Q9H2A9 424 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 ACTR5Q9H9F9 607 aaPredicted RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 AKIRIN1Q9H9L7 192 aaPredicted RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 ACSS2Q9NR19 701 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 ACTR10Q9NZ32 417 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 SERTAD3Q9UJW9 196 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 SNX7Q9UNH6 387 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 FARSAQ9Y285 508 aaKnown RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 ASF1AQ9Y294 204 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 R3HDM2Q9Y2K5 976 aaKnown RBP9.51□□□□□ -0.89
VRK3-216ENST00000599342 CFAP46Q8IYW2 2715 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 PIEZO2Q9H5I5 2752 aa9.51□□□□□ -0.89
VRK3-216ENST00000599342 HEATR9A2RTY3 570 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 MROH6A6NGR9 719 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ARGFXA6NJG6 315 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ERI2A8K979 691 aaKnown RBP9.5□□□□□ -0.89
VRK3-216ENST00000599342 MEN1O00255 615 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 BTN3A3O00478 584 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 KDM1AO60341 852 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 DNAJB5O75953 348 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 IFNB1P01574 187 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 RAB40ALP0C0E4 278 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 OR56A5P0C7T3 313 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 MSL3P1P0C860 447 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ST6GAL1P15907 406 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 STIP1P31948 543 aaKnown RBP9.5□□□□□ -0.89
VRK3-216ENST00000599342 SHMT2P34897 504 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 PGDP52209 483 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ITGA1P56199 1179 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 ABRQ12979 859 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 IL10RAQ13651 578 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 LAMB3Q13751 1172 aa9.5□□□□□ -0.89
VRK3-216ENST00000599342 BOP1Q14137 746 aaKnown RBP9.5□□□□□ -0.89
VRK3-216ENST00000599342 BRD3Q15059 726 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms