RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SBK3P0C264 359 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 CTSEP14091 401 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 HALP42357 657 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 KCNC1P48547 511 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 HNMTP50135 292 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 NUBP1P53384 320 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 ILF3Q12906 894 aaKnown RBP eCLIP14.91□□□□□ -0.02
TRIM28-209ENST00000597423 TGFBIQ15582 683 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 PFKFB4Q16877 469 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 ALG11Q2TAA5 492 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 METTL2BQ6P1Q9 378 aaKnown RBP14.91□□□□□ -0.02
TRIM28-209ENST00000597423 SBSNQ6UWP8 590 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 CEP68Q76N32 757 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 PARGQ86W56 976 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 VRK3Q8IV63 474 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 MAML2Q8IZL2 1156 aaPredicted RBP14.91□□□□□ -0.02
TRIM28-209ENST00000597423 CFAP61Q8NHU2 1237 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 EXT2Q93063 718 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 TSACCQ96A04 125 aaPredicted RBP14.91□□□□□ -0.02
TRIM28-209ENST00000597423 CNDP1Q96KN2 507 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 EGFL8Q99944 293 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 MECRQ9BV79 373 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 GSDMCQ9BYG8 508 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 PITPNM3Q9BZ71 974 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 OSGEPL1Q9H4B0 414 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 EML4Q9HC35 981 aaKnown RBP14.91□□□□□ -0.02
TRIM28-209ENST00000597423 MRPL40Q9NQ50 206 aaKnown RBP14.91□□□□□ -0.02
TRIM28-209ENST00000597423 ARL15Q9NXU5 204 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 HEBP2Q9Y5Z4 205 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 PLXNB3Q9ULL4 1909 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 A0A1W2PR77 199 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 A8MT66 165 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 VILLO15195 856 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 KLK8O60259 260 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 NPHS1O60500 1241 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 FUCA1P04066 466 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 MAOBP27338 520 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 PDHA2P29803 388 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 DHPSP49366 369 aaPredicted RBP14.9□□□□□ -0.02
TRIM28-209ENST00000597423 HK3P52790 923 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 NAGLUP54802 743 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 HERVK_113P63132 956 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 KRT33BQ14525 404 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 WASH2PQ6VEQ5 465 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 CPLX4Q7Z7G2 160 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 PDZD3Q86UT5 571 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 HOMEZQ8IX15 550 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 KIRREL3Q8IZU9 778 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 RAB42Q8N4Z0 105 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 CCNYL1Q8N7R7 359 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 PTGR2Q8N8N7 351 aaPredicted RBP14.9□□□□□ -0.02
TRIM28-209ENST00000597423 FBXO15Q8NCQ5 510 aaPredicted RBP14.9□□□□□ -0.02
TRIM28-209ENST00000597423 TFGQ92734 400 aaPredicted RBP14.9□□□□□ -0.02
TRIM28-209ENST00000597423 PHF21BQ96EK2 531 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 CCDC138Q96M89 665 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 TRMOQ9BU70 441 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 ERVK-6Q9BXR3 956 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 EPN3Q9H201 632 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 OR52A5Q9H2C5 316 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 WASH6PQ9NQA3 447 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 GPR27Q9NS67 375 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 TM7SF3Q9NS93 570 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 UTP6Q9NYH9 597 aaKnown RBP14.9□□□□□ -0.02
TRIM28-209ENST00000597423 GULP1Q9UBP9 304 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 NUMA1Q14980 2115 aa14.9□□□□□ -0.02
TRIM28-209ENST00000597423 A0A1B0GTW7 788 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 PDZK1P1A8MUH7 402 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 FGF3P11487 239 aaPredicted RBP14.89□□□□□ -0.03
TRIM28-209ENST00000597423 MTHFD2P13995 350 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 SLC2A4P14672 509 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 ACADLP28330 430 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 HSD17B2P37059 387 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 SLC1A6P48664 564 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 ABCE1P61221 599 aaKnown RBP14.89□□□□□ -0.03
TRIM28-209ENST00000597423 FZD2Q14332 565 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 ANKS6Q68DC2 871 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 FAM83HQ6ZRV2 1179 aaPredicted RBP14.89□□□□□ -0.03
TRIM28-209ENST00000597423 RABEPKQ7Z6M1 372 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 PDPRQ8NCN5 879 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 PHC3Q8NDX5 983 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 RAD51AP1Q96B01 352 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 GRAMD1AQ96CP6 724 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 L3HYPDHQ96EM0 354 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 ZC3H10Q96K80 434 aaKnown RBP14.89□□□□□ -0.03
TRIM28-209ENST00000597423 WWP1Q9H0M0 922 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 TRIT1Q9H3H1 467 aaKnown RBP14.89□□□□□ -0.03
TRIM28-209ENST00000597423 POLG2Q9UHN1 485 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 ADAMTS6Q9UKP5 1117 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 IKZF3Q9UKT9 509 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 PDE10AQ9Y233 779 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 KCNK6Q9Y257 313 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 ASF1AQ9Y294 204 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 COLEC10Q9Y6Z7 277 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 BPTFQ12830 3046 aa14.89□□□□□ -0.03
TRIM28-209ENST00000597423 NCF1BA6NI72 391 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 ZNF839A8K0R7 811 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 NCF1CA8MVU1 366 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 TNFRSF10AO00220 468 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 HRO43593 1189 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 SUPT7LO94864 414 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms