RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 KLF15Q9UIH9 416 aa10.5□□□□□ -0.73
SS18-213ENST00000579640 PCOLCE2Q9UKZ9 415 aa10.5□□□□□ -0.73
SS18-213ENST00000579640 RNF112Q9ULX5 631 aa10.5□□□□□ -0.73
SS18-213ENST00000579640 PLEKHM1Q9Y4G2 1056 aa10.5□□□□□ -0.73
SS18-213ENST00000579640 GON4LQ3T8J9 2241 aa10.5□□□□□ -0.73
SS18-213ENST00000579640 TARM1B6A8C7 271 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 TK2O00142 265 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 BIRC5O15392 142 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 DFNA5O60443 496 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SMIM24O75264 130 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 EPN2O95208 641 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 HIST1H2AGP0C0S8 130 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 TPBGLP0DKB5 382 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 MYL2P10916 166 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SLC2A4P14672 509 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 HIST1H2ADP20671 130 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ACADLP28330 430 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 HALP42357 657 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SERPINB4P48594 390 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 IL9RQ01113 521 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ABRQ12979 859 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 OR4D1Q15615 310 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 KIF19Q2TAC6 998 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 UAP1L1Q3KQV9 507 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 CDKL4Q5MAI5 379 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 CAPRIN2Q6IMN6 1127 aaKnown RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 IL27RAQ6UWB1 636 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SBSNQ6UWP8 590 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ABRAXAS1Q6UWZ7 409 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ZYG11AQ6WRX3 759 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 UBE2R2Q712K3 238 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 GKN2Q86XP6 184 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 GPSM1Q86YR5 675 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SPNS2Q8IVW8 549 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 FBXO15Q8NCQ5 510 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 MAGEC3Q8TD91 643 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 MCOLN3Q8TDD5 553 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SREK1Q8WXA9 508 aaKnown RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 HIST1H2AHQ96KK5 128 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 RMDN2Q96LZ7 410 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 HIST1H2AJQ99878 128 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 H2AFJQ9BTM1 129 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 LRFN3Q9BTN0 628 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 LRRC61Q9BV99 259 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ZDHHC5Q9C0B5 715 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 WWP1Q9H0M0 922 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 IRF2BPLQ9H1B7 796 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 PARVBQ9HBI1 364 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 NUDT4Q9NZJ9 180 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 COPG2Q9UBF2 871 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 TSR3Q9UJK0 312 aaKnown RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 IKZF3Q9UKT9 509 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 OARD1Q9Y530 152 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 HEBP2Q9Y5Z4 205 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ZFC3H1O60293 1989 aaKnown RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 OR5K4A6NMS3 321 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 PDZK1P1A8MUH7 402 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 YKT6O15498 198 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 S100BP04271 92 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 SBK3P0C264 359 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 CPA3P15088 417 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ATP5F1P24539 256 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 AK4P27144 223 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 MAP4P27816 1152 aaKnown RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 RXRGP48443 463 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ARRB1P49407 418 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 ATP1A2P50993 1020 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 PRKAA2P54646 552 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 AP1S2P56377 157 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 WDR4P57081 412 aaKnown RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 IRX4P78413 519 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 CDKL1Q00532 357 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ASPHQ12797 758 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 PPP1R3AQ16821 1122 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ZNF542PQ5EBM4 170 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 PRRT3Q5FWE3 981 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 TTC23LQ6PF05 361 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SLC23A3Q6PIS1 610 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 TAF8Q7Z7C8 310 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 NRROSQ86YC3 692 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SLC22A9Q8IVM8 553 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 MDM1Q8TC05 714 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 MGARPQ8TDB4 240 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 TFGQ92734 400 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 TCEAL2Q9H3H9 227 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 C12orf65Q9H3J6 166 aaKnown RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 CPSF2Q9P2I0 782 aaKnown RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 ADAMTS6Q9UKP5 1117 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SLC6A14Q9UN76 642 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 SNX11Q9Y5W9 270 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 ST14Q9Y5Y6 855 aa10.49□□□□□ -0.73
SS18-213ENST00000579640 TP53BP1Q12888 1972 aaPredicted RBP10.49□□□□□ -0.73
SS18-213ENST00000579640 MUC3AQ02505 3323 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 SUPT3HB4E1H0 165 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 G3V2L1 256 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 SCAMP1O15126 338 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 FFAR2O15552 330 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 SNX2O60749 519 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 SUPT3HO75486 399 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 BPGMP07738 259 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms