RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TRBV5-4A0A0C4DH59 114 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 BLACEA4D250 179 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 OR6C74A6NCV1 312 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 SLC9B1P1A6NJY1 282 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 BTN3A3O00478 584 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 BTN3A1O00481 513 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 STX7O15400 261 aaKnown RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 CBFA2T2O43439 604 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 CPNE3O75131 537 aaKnown RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 SCRG1O75711 98 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 POLBP06746 335 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 CTSBP07858 339 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 MSL3P1P0C860 447 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 TPBGLP0DKB5 382 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 GP1BBP13224 206 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 ST6GAL1P15907 406 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 POLR2CP19387 275 aaPredicted RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 MSH3P20585 1137 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 PSMA3P25788 255 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 PDHA2P29803 388 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 CTNNA1P35221 906 aaKnown RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 PTGIRP43119 386 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 MAGEA1P43355 309 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 GABRA4P48169 554 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 ITGA1P56199 1179 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 OTUD4Q01804 1114 aaKnown RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 PLCL1Q15111 1095 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 LONRF2Q1L5Z9 754 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 TUBB8Q3ZCM7 444 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 NADK2Q4G0N4 442 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 ANKRD20A2Q5SQ80 823 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 SWT1Q5T5J6 900 aaKnown RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 ANKRD20A1Q5TYW2 823 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 ANKRD20A3Q5VUR7 823 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 KCTD11Q693B1 232 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 C11orf63Q6NUN7 778 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 FAM198BQ6UWH4 519 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 SYVN1Q86TM6 617 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 BPHLQ86WA6 291 aaPredicted RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 OOSP2Q86WS3 158 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 CFAP206Q8IYR0 622 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 RCOR2Q8IZ40 523 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 CARFQ8N187 725 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 NXPE1Q8N323 547 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 FAM26EQ8N5C1 309 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 TEX19Q8NA77 164 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 OR4E2Q8NGC2 313 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 OR1L3Q8NH93 324 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 FLVCR1-AS1Q8TAF5 88 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 ACTL9Q8TC94 416 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 TTC25Q96NG3 672 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 FAM118BQ9BPY3 351 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 TLR10Q9BXR5 811 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 PITPNM3Q9BZ71 974 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 ZCCHC2Q9C0B9 1178 aaKnown RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 COG4Q9H9E3 785 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 ARNT2Q9HBZ2 717 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 MED4Q9NPJ6 270 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 PCMTD2Q9NV79 361 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 FAM8A1Q9UBU6 413 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 REXO2Q9Y3B8 237 aaKnown RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 PKP3Q9Y446 797 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 PCDHGA9Q9Y5G4 932 aaKnown RBP6.53□□□□□ -1.36
VPS53-213ENST00000572334 PCDHA3Q9Y5H8 950 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 PCDHA13Q9Y5I0 950 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 DUSP10Q9Y6W6 482 aa6.53□□□□□ -1.36
VPS53-213ENST00000572334 CELSR2Q9HCU4 2923 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 C17orf113A0A1B0GUU1 675 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 UBA6A0AVT1 1052 aaPredicted RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 GOLGA6L9A6NEM1 432 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 C5orf60A6NFR6 353 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ERICH4A6NGS2 130 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ARGFXA6NJG6 315 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 AKR1B15C9JRZ8 316 aaPredicted RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 H7C0C1 242 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 H7C0S8 307 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 MEN1O00255 615 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 PJA2O43164 708 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 RAB40ALP0C0E4 278 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ATP1B2P14415 290 aaPredicted RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 PVRP15151 417 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 GNLYP22749 145 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 PRDX3P30048 256 aaKnown RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 AKT1P31749 480 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 PTPN7P35236 360 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ATP5OP48047 213 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 LMAN1P49257 510 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 GEMP55040 296 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 HNRNPH2P55795 449 aaKnown RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 TMPRSS15P98073 1019 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 SPARCL1Q14515 664 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ZIC1Q15915 447 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ZSCAN26Q16670 478 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 PRR30Q53SZ7 412 aaPredicted RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 KLHL35Q6PF15 583 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 SNX20Q7Z614 316 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 TMEM126BQ8IUX1 230 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 LURAP1LQ8IV03 231 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 CNGA4Q8IV77 575 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 PIANPQ8IYJ0 282 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms