RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 HMGB4Q8WW32 186 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SLC5A11Q8WWX8 675 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 TUBGCP3Q96CW5 907 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 PGAM5Q96HS1 289 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 DHTKD1Q96HY7 919 aaPredicted RBP6.09□□□□□ -1.43
VPS53-212ENST00000572259 DGAT2Q96PD7 388 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 FAM111AQ96PZ2 611 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 ACBD6Q9BR61 282 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SLC25A23Q9BV35 468 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 MTMR12Q9C0I1 747 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SLC5A7Q9GZV3 580 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 IKZF4Q9H2S9 585 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SUDS3Q9H7L9 328 aaPredicted RBP6.09□□□□□ -1.43
VPS53-212ENST00000572259 CD93Q9NPY3 652 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SPATS2LQ9NUQ6 558 aaKnown RBP6.09□□□□□ -1.43
VPS53-212ENST00000572259 DMAC2Q9NW81 257 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SMPD4Q9NXE4 827 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 GDAP2Q9NXN4 497 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 MPP6Q9NZW5 540 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 CDH22Q9UJ99 828 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 OSGIN1Q9UJX0 560 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 TMED5Q9Y3A6 229 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 ASB3Q9Y575 518 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SNX9Q9Y5X1 595 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 CLUHO75153 1309 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 FAM237BA0A1B0GVD1 139 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 OR6C76A6NM76 312 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ZNF785A8K8V0 405 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 CDRT15L2A8MXV6 281 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 M0QX08 132 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 O00370 1275 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 PPEF2O14830 753 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ADAM12O43184 909 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 DHHO43323 396 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 CEP104O60308 925 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 FOXD2O60548 495 aaPredicted RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 DNAJB5O75953 348 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SIX3O95343 332 aaPredicted RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 TUBBP07437 444 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 INHBAP08476 426 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 GTF2H1P32780 548 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 GNL1P36915 607 aaPredicted RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 PRCPP42785 496 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 CCR10P46092 362 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 MTIF2P46199 727 aaKnown RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 CPA2P48052 419 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 VAMP7P51809 220 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 BMXP51813 675 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ATXN3P54252 364 aaPredicted RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 ACTR1AP61163 376 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 TUBB4BP68371 445 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 OLR1P78380 273 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 GBE1Q04446 702 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 CETN1Q12798 172 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 GPS1Q13098 491 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 BMPR2Q13873 1038 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 INSCQ1MX18 579 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 HYAL4Q2M3T9 481 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SGSM1Q2NKQ1 1148 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 C15orf59Q2T9L4 293 aaPredicted RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 MGAT5BQ3V5L5 792 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ANKRD20A4Q4UJ75 823 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SLC39A12Q504Y0 691 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ANKRD20A8PQ5CZ79 823 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ZNF667Q5HYK9 610 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 TMEM31Q5JXX7 168 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ANKRD20A2Q5SQ80 823 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ANKRD20A1Q5TYW2 823 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ANKRD20A3Q5VUR7 823 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 WSCD1Q658N2 575 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 NAIF1Q69YI7 327 aaPredicted RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 HMBOX1Q6NT76 420 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ZDHHC24Q6UX98 284 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 MTSS1LQ765P7 747 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 GRASPQ7Z6J2 395 aaPredicted RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 DSG4Q86SJ6 1040 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 PDSS2Q86YH6 399 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 TICAM1Q8IUC6 712 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 UBALD2Q8IYN6 164 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 TTC9BQ8N6N2 239 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 IL17RCQ8NAC3 791 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ATAD1Q8NBU5 361 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 OR5B17Q8NGF7 314 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 RFWD2Q8NHY2 731 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 CORO2AQ92828 525 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 C1orf74Q96LT6 269 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 C8orf49Q96NF6 230 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 WWC2-AS2Q96NR7 200 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 DCLRE1CQ96SD1 692 aaKnown RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 RUFY1Q96T51 708 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SH3GL2Q99962 352 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ZPBPQ9BS86 351 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 TINAGL1Q9GZM7 467 aaPredicted RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 GPR88Q9GZN0 384 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 KLC2Q9H0B6 622 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 DPH5Q9H2P9 285 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SNX25Q9H3E2 840 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SYNPO2LQ9H987 977 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 PLEKHA2Q9HB19 425 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SCPEP1Q9HB40 452 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms