RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SULT1C3Q6IMI6 304 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 GALNT13Q8IUC8 556 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 MSRB3Q8IXL7 192 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 FAM86B1Q8N7N1 296 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 OR2T12Q8NG77 320 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 FAM81AQ8TBF8 368 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 UBTD2Q8WUN7 234 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 MUS81Q96NY9 551 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 NTMT1Q9BV86 223 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 HIPK3Q9H422 1215 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 ANGPTL3Q9Y5C1 460 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 MAGED1Q9Y5V3 778 aaPredicted RBP22.34■■□□□ 1.17
VPS53-211ENST00000571805 SCN5AQ14524 2016 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 PIKFYVEQ9Y2I7 2098 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 ALBP02768 609 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 PCNAP12004 261 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 GKP32189 559 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 YAP1P46937 504 aaKnown RBP22.34■■□□□ 1.17
VPS53-211ENST00000571805 HLCSP50747 726 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 NUP107P57740 925 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 CHRNB3Q05901 458 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 ZIK1Q3SY52 487 aaPredicted RBP22.34■■□□□ 1.17
VPS53-211ENST00000571805 FAM174BQ3ZCQ3 159 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 KIAA1841Q6NSI8 718 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 MACC1Q6ZN28 852 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 TTC16Q8NEE8 873 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 ZNF548Q8NEK5 533 aaPredicted RBP22.34■■□□□ 1.17
VPS53-211ENST00000571805 BHMTQ93088 406 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 ZBTB18Q99592 522 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 DOK1Q99704 481 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 POLR1BQ9H9Y6 1135 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 SLC25A37Q9NYZ2 338 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 WWOXQ9NZC7 414 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 CDH7Q9ULB5 785 aa22.34■■□□□ 1.17
VPS53-211ENST00000571805 BCL2L1Q07817 233 aa22.33■■□□□ 1.17
VPS53-211ENST00000571805 MAD2L1Q13257 205 aaPredicted RBP22.33■■□□□ 1.17
VPS53-211ENST00000571805 CDH18Q13634 790 aa22.33■■□□□ 1.17
VPS53-211ENST00000571805 NKG7Q16617 165 aa22.33■■□□□ 1.17
VPS53-211ENST00000571805 KCTD8Q6ZWB6 473 aa22.33■■□□□ 1.17
VPS53-211ENST00000571805 ITIH5Q86UX2 942 aa22.33■■□□□ 1.17
VPS53-211ENST00000571805 IGSF21Q96ID5 467 aa22.33■■□□□ 1.17
VPS53-211ENST00000571805 KLQ9UEF7 1012 aa22.33■■□□□ 1.17
VPS53-211ENST00000571805 LOC730098B7Z3J9 87 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 K7EPI3 171 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 ULK1O75385 1050 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 WDR47O94967 919 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 DCKP27707 260 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 AKT1P31749 480 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 TTKP33981 857 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 GNPDA1P46926 289 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 PPP3CCP48454 512 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 CHRNA6Q15825 494 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 MAPKAPK3Q16644 382 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 Q6ZNB5 142 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 DNAJB7Q7Z6W7 309 aaPredicted RBP22.33■■□□□ 1.16
VPS53-211ENST00000571805 LIX1Q8N485 282 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 DRAXINQ8NBI3 349 aaPredicted RBP22.33■■□□□ 1.16
VPS53-211ENST00000571805 GLB1L3Q8NCI6 653 aaPredicted RBP22.33■■□□□ 1.16
VPS53-211ENST00000571805 OR10A6Q8NH74 314 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 FIG4Q92562 907 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 IFT80Q9P2H3 777 aaPredicted RBP22.33■■□□□ 1.16
VPS53-211ENST00000571805 TRPS1Q9UHF7 1281 aa22.33■■□□□ 1.16
VPS53-211ENST00000571805 ZNF490Q9ULM2 529 aaPredicted RBP22.33■■□□□ 1.16
VPS53-211ENST00000571805 GLYATL1P3A0A0U1RQE8 302 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 MTHFRP42898 656 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 CYP4F3Q08477 520 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 SPANXN4Q5MJ08 99 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 LYPLAL1Q5VWZ2 237 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 TPGS2Q68CL5 300 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 ENPP6Q6UWR7 440 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 CHST15Q7LFX5 561 aaPredicted RBP22.32■■□□□ 1.16
VPS53-211ENST00000571805 RGL4Q8IZJ4 473 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 ZNF420Q8TAQ5 688 aaPredicted RBP22.32■■□□□ 1.16
VPS53-211ENST00000571805 SLC22A17Q8WUG5 538 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 UGT2B28Q9BY64 529 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 DPY30Q9C005 99 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 RDH14Q9HBH5 336 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 PREBQ9HCU5 417 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 ASIC5Q9NY37 505 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP22.32■■□□□ 1.16
VPS53-211ENST00000571805 MANBAO00462 879 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 ATE1O95260 518 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 EBLN1P0CF75 366 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 CBX2Q14781 532 aaPredicted RBP22.32■■□□□ 1.16
VPS53-211ENST00000571805 METTL2BQ6P1Q9 378 aaKnown RBP22.32■■□□□ 1.16
VPS53-211ENST00000571805 SUSD1Q6UWL2 747 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 NECAB2Q7Z6G3 386 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 STK32CQ86UX6 486 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 KRTCAP2Q8N6L1 136 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 USP7Q93009 1102 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 THUMPD3Q9BV44 507 aaKnown RBP22.32■■□□□ 1.16
VPS53-211ENST00000571805 CLMPQ9H6B4 373 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 ZFP14Q9HCL3 533 aa22.32■■□□□ 1.16
VPS53-211ENST00000571805 H3BMQ9 156 aa22.31■■□□□ 1.16
VPS53-211ENST00000571805 GMNNO75496 209 aa22.31■■□□□ 1.16
VPS53-211ENST00000571805 IL6P05231 212 aa22.31■■□□□ 1.16
VPS53-211ENST00000571805 PGRP06401 933 aa22.31■■□□□ 1.16
VPS53-211ENST00000571805 THRBP10828 461 aa22.31■■□□□ 1.16
VPS53-211ENST00000571805 ELK4P28324 431 aa22.31■■□□□ 1.16
VPS53-211ENST00000571805 SHMT2P34897 504 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms