RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TTLL9Q3SXZ7 439 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 ZNF658BQ4V348 819 aaPredicted RBP20.14■□□□□ 0.81
VPS53-210ENST00000571456 SYTL3Q4VX76 610 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 PLEKHS1Q5SXH7 462 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 WDR93Q6P2C0 686 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 OTOAQ7RTW8 1153 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 UNC5BQ8IZJ1 945 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 CPNE1Q99829 537 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.14■□□□□ 0.81
VPS53-210ENST00000571456 SEMA4CQ9C0C4 833 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 UCK1Q9HA47 277 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 FBXO6Q9NRD1 293 aaPredicted RBP20.14■□□□□ 0.81
VPS53-210ENST00000571456 POT1Q9NUX5 634 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 GULP1Q9UBP9 304 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 EIF3FO00303 357 aaPredicted RBP20.13■□□□□ 0.81
VPS53-210ENST00000571456 IFRD1O00458 451 aaPredicted RBP20.13■□□□□ 0.81
VPS53-210ENST00000571456 SNX2O60749 519 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 PBLDP30039 288 aaPredicted RBP20.13■□□□□ 0.81
VPS53-210ENST00000571456 MAPK9P45984 424 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 GPR3P46089 330 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 CSE1LP55060 971 aaKnown RBP20.13■□□□□ 0.81
VPS53-210ENST00000571456 KYNUQ16719 465 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 CLPPQ16740 277 aaPredicted RBP20.13■□□□□ 0.81
VPS53-210ENST00000571456 LRRC8EQ6NSJ5 796 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 ZNF438Q7Z4V0 828 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 ARL14Q8N4G2 192 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 KYQ8NBH2 561 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 CCDC97Q96F63 343 aaPredicted RBP20.13■□□□□ 0.81
VPS53-210ENST00000571456 CYTH2Q99418 400 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 CDC42EP4Q9H3Q1 356 aaKnown RBP20.13■□□□□ 0.81
VPS53-210ENST00000571456 ANKZF1Q9H8Y5 726 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 PRDM8Q9NQV8 689 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 NINJ2Q9NZG7 142 aa20.13■□□□□ 0.81
VPS53-210ENST00000571456 SLC5A10A0PJK1 596 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 BRINP1O60477 761 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 VPS26AO75436 327 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 GPC4O75487 556 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 HAUS5O94927 633 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 AHSGP02765 367 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 ABHD2P08910 425 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 CHRM3P20309 590 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 AOAHP28039 575 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 MPP1Q00013 466 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 NR1D2Q14995 579 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 TCEA2Q15560 299 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 CTSL3PQ5NE16 218 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 TRIM48Q8IWZ4 208 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 SLC37A2Q8TED4 501 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 AARSD1Q9BTE6 412 aaKnown RBP20.12■□□□□ 0.81
VPS53-210ENST00000571456 RHOJQ9H4E5 214 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 EPB41L1Q9H4G0 881 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 TAS2R13Q9NYV9 303 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 SIRPGQ9P1W8 387 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 COLEC10Q9Y6Z7 277 aa20.12■□□□□ 0.81
VPS53-210ENST00000571456 AHCTF1Q8WYP5 2266 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 LY6G6EA0A0G2JKS1 128 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 SLC28A2O43868 658 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 KDM1AO60341 852 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 RFPL3O75679 317 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 SLCO2B1O94956 709 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 VIPP01282 170 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 CCR7P32248 378 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 GP5P40197 560 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 ACADVLP49748 655 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 BOP1Q14137 746 aaKnown RBP20.11■□□□□ 0.81
VPS53-210ENST00000571456 HES3Q5TGS1 186 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 CAPRIN2Q6IMN6 1127 aaKnown RBP20.11■□□□□ 0.81
VPS53-210ENST00000571456 FAM45BPQ6NSW5 357 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 FAM83HQ6ZRV2 1179 aaPredicted RBP20.11■□□□□ 0.81
VPS53-210ENST00000571456 CAPN12Q6ZSI9 719 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 STRA8Q7Z7C7 330 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 SLC22A15Q8IZD6 547 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 FAM45AQ8TCE6 357 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 FBF1Q8TES7 1133 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 CXorf40BQ96DE9 158 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 OR52A5Q9H2C5 316 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 ACSS3Q9H6R3 686 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 CAAP1Q9H8G2 361 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 CPNE7Q9UBL6 633 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 U3KQA8 63 aa20.11■□□□□ 0.81
VPS53-210ENST00000571456 A0A087WUV0 522 aaPredicted RBP20.1■□□□□ 0.81
VPS53-210ENST00000571456 RHPN2P1A8MT19 583 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 RPN2P04844 631 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 CBSLP0DN79 551 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 ENO3P13929 434 aaPredicted RBP20.1■□□□□ 0.81
VPS53-210ENST00000571456 BRAFP15056 766 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 RPL10P27635 214 aaKnown RBP20.1■□□□□ 0.81
VPS53-210ENST00000571456 CBSP35520 551 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 PMS2P54278 862 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 EPHA4P54764 986 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 UBE2IP63279 158 aaKnown RBP20.1■□□□□ 0.81
VPS53-210ENST00000571456 HHEXQ03014 270 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 LY6DQ14210 128 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 KLHL38Q2WGJ6 581 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 ZNF789Q5FWF6 425 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.1■□□□□ 0.81
VPS53-210ENST00000571456 GRTP1Q5TC63 336 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 CNSTQ6PJW8 725 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 MICALCLQ6ZW33 695 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 NEK10Q6ZWH5 1172 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms