RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SPRY4Q9C004 299 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 ZNF768Q9H5H4 540 aaKnown RBP14.64□□□□□ -0.07
VPS39-210ENST00000568357 WDR70Q9NW82 654 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 SIDT1Q9NXL6 827 aaKnown RBP14.64□□□□□ -0.07
VPS39-210ENST00000568357 ANAPC5Q9UJX4 755 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 HEBP2Q9Y5Z4 205 aa14.64□□□□□ -0.07
VPS39-210ENST00000568357 IGHV5-51A0A0C4DH38 117 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 OR6C74A6NCV1 312 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 SDR42E2A6NKP2 422 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.63□□□□□ -0.07
VPS39-210ENST00000568357 ERVH48-1M5A8F1 160 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 IFRD1O00458 451 aaPredicted RBP14.63□□□□□ -0.07
VPS39-210ENST00000568357 FTH1P02794 183 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 MLNP12872 115 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 CD82P27701 267 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 ACADLP28330 430 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 NDUFS1P28331 727 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 CCR7P32248 378 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 PPARGP37231 505 aaPredicted RBP14.63□□□□□ -0.07
VPS39-210ENST00000568357 PTGIRP43119 386 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 ARCN1P48444 511 aaKnown RBP14.63□□□□□ -0.07
VPS39-210ENST00000568357 TTPAP49638 278 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 TMPRSS3P57727 454 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 RAB15P59190 212 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 KCNC4Q03721 635 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 SRSF1Q07955 248 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS39-210ENST00000568357 PRKG2Q13237 762 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 BOP1Q14137 746 aaKnown RBP14.63□□□□□ -0.07
VPS39-210ENST00000568357 AARS2Q5JTZ9 985 aaKnown RBP14.63□□□□□ -0.07
VPS39-210ENST00000568357 ZNF449Q6P9G9 518 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 AGGF1Q8N302 714 aaeCLIP14.63□□□□□ -0.07
VPS39-210ENST00000568357 ACVR1CQ8NER5 493 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 LKAAEAR1Q8TD35 194 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 GRK7Q8WTQ7 553 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 SERPINB12Q96P63 405 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 CCNL2Q96S94 520 aaPredicted RBP14.63□□□□□ -0.07
VPS39-210ENST00000568357 NAPGQ99747 312 aaPredicted RBP14.63□□□□□ -0.07
VPS39-210ENST00000568357 CARD6Q9BX69 1037 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 SEMA5BQ9P283 1151 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 SAR1BQ9Y6B6 198 aa14.63□□□□□ -0.07
VPS39-210ENST00000568357 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS39-210ENST00000568357 PRMT5O14744 637 aaPredicted RBP14.62□□□□□ -0.07
VPS39-210ENST00000568357 TPBGLP0DKB5 382 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 NELFEP18615 380 aaKnown RBP14.62□□□□□ -0.07
VPS39-210ENST00000568357 POLR2CP19387 275 aaPredicted RBP14.62□□□□□ -0.07
VPS39-210ENST00000568357 MAGEA3P43357 314 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 CSE1LP55060 971 aaKnown RBP14.62□□□□□ -0.07
VPS39-210ENST00000568357 UCNP55089 124 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 FOXM1Q08050 763 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 PPP1R7Q15435 360 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 ARHGAP40Q5TG30 622 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 CASC4Q6P4E1 433 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 VASH2Q86V25 355 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 VRK3Q8IV63 474 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 KRT222Q8N1A0 295 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 C17orf53Q8N3J3 647 aaPredicted RBP14.62□□□□□ -0.07
VPS39-210ENST00000568357 OR52E1Q8NGJ3 308 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 LCN9Q8WX39 176 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 NKD1Q969G9 470 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 PPM1MQ96MI6 270 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 MAP3K3Q99759 626 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 P2RY12Q9H244 342 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 SRMSQ9H3Y6 488 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 TFB2MQ9H5Q4 396 aaKnown RBP14.62□□□□□ -0.07
VPS39-210ENST00000568357 MVB12BQ9H7P6 319 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 XAB2Q9HCS7 855 aaKnown RBP14.62□□□□□ -0.07
VPS39-210ENST00000568357 PCYOX1Q9UHG3 505 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 CDYLQ9Y232 598 aa14.62□□□□□ -0.07
VPS39-210ENST00000568357 FAM237BA0A1B0GVD1 139 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 MAGEB16A2A368 324 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 CTAGE9A4FU28 777 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 STMND1H3BQB6 276 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 BTN3A3O00478 584 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 POLR1CO15160 346 aaPredicted RBP14.61□□□□□ -0.07
VPS39-210ENST00000568357 NDUFS3O75489 264 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 IVDP26440 423 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 KPNA2P52292 529 aaKnown RBP14.61□□□□□ -0.07
VPS39-210ENST00000568357 VAC14Q08AM6 782 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 HSPA14Q0VDF9 509 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 LY6DQ14210 128 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 ANKRD20A4Q4UJ75 823 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 RNASEH2BQ5TBB1 312 aaKnown RBP14.61□□□□□ -0.07
VPS39-210ENST00000568357 ARMC3Q5W041 872 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 KIAA0930Q6ICG6 404 aaPredicted RBP14.61□□□□□ -0.07
VPS39-210ENST00000568357 FBXO38Q6PIJ6 1188 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 CEACAM20Q6UY09 585 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 CCDC81Q6ZN84 652 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 TMEM135Q86UB9 458 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 OOSP2Q86WS3 158 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 KLHL7Q8IXQ5 586 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 PPIL6Q8IXY8 311 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 OR5AR1Q8NGP9 310 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 SNRNP27Q8WVK2 155 aaKnown RBP14.61□□□□□ -0.07
VPS39-210ENST00000568357 UBXN4Q92575 508 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 SLCO2A1Q92959 643 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 RNF31Q96EP0 1072 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 SLC41A2Q96JW4 573 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 SIGLEC10Q96LC7 697 aa14.61□□□□□ -0.07
VPS39-210ENST00000568357 TEFMQ96QE5 360 aaKnown RBP14.61□□□□□ -0.07
VPS39-210ENST00000568357 OR6C1Q96RD1 312 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms