RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PMS2P1A4D2B8 440 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 FAM159BA6NKW6 160 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 F8W8V4 182 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 H3BMM5 538 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 AGRPO00253 132 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 CSO75390 466 aaKnown RBP19.05■□□□□ 0.64
CLN3-225ENST00000566824 APOA4P06727 396 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 MYBL2P10244 700 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 JUPP14923 745 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 CUL1Q13616 776 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 CCNI2Q6ZMN8 369 aaPredicted RBP19.05■□□□□ 0.64
CLN3-225ENST00000566824 RBM44Q6ZP01 1051 aaKnown RBP19.05■□□□□ 0.64
CLN3-225ENST00000566824 OTOAQ7RTW8 1153 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 STRA8Q7Z7C7 330 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 ZBTB2Q8N680 514 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 FBF1Q8TES7 1133 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 ASZ1Q8WWH4 475 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 RSC1A1Q92681 617 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 SH3KBP1Q96B97 665 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 FAM129AQ9BZQ8 928 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 STN1Q9H668 368 aaKnown RBP19.05■□□□□ 0.64
CLN3-225ENST00000566824 MTRF1LQ9UGC7 380 aaKnown RBP19.05■□□□□ 0.64
CLN3-225ENST00000566824 CIDEBQ9UHD4 219 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 NFS1Q9Y697 457 aa19.05■□□□□ 0.64
CLN3-225ENST00000566824 FAM221BA6H8Z2 402 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 KRT87PA6NCN2 255 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 IFRD1O00458 451 aaPredicted RBP19.04■□□□□ 0.64
CLN3-225ENST00000566824 FAM155BO75949 473 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 PPP1CAP62136 330 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 CAMK2BQ13554 666 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 TMED2Q15363 201 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 ISXQ2M1V0 245 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 KBTBD12Q3ZCT8 623 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 PLEKHS1Q5SXH7 462 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 GALNT7Q86SF2 657 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 ZC3HC1Q86WB0 502 aaKnown RBP19.04■□□□□ 0.64
CLN3-225ENST00000566824 SLITRK4Q8IW52 837 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 LMNTD1Q8N9Z9 388 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 CFAP61Q8NHU2 1237 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 CD200R1Q8TD46 325 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 NCSTNQ92542 709 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 OLFM1Q99784 485 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 HGH1Q9BTY7 390 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.04■□□□□ 0.64
CLN3-225ENST00000566824 CDC42EP4Q9H3Q1 356 aaKnown RBP19.04■□□□□ 0.64
CLN3-225ENST00000566824 XKR8Q9H6D3 395 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 KIR3DX1Q9H7L2 352 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 ANKZF1Q9H8Y5 726 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 PLAGL1Q9UM63 463 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 ENTPD2Q9Y5L3 495 aa19.04■□□□□ 0.64
CLN3-225ENST00000566824 E5RI56 91 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 TCEA3O75764 348 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 UBXN7O94888 489 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 CPNE6O95741 557 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 PROS1P07225 676 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 GSTA2P09210 222 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 EPHA4P54764 986 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 GFERP55789 205 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 SQSTM1Q13501 440 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 MAP9Q49MG5 647 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 ZNF449Q6P9G9 518 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 CYS1Q717R9 158 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 RELL1Q8IUW5 271 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 GALNT15Q8N3T1 639 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 GPATCH11Q8N954 259 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 AVL9Q8NBF6 648 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 OR10G6Q8NH81 332 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 KCNJ9Q92806 393 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 CCDC68Q9H2F9 335 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.03■□□□□ 0.64
CLN3-225ENST00000566824 ASF1AQ9Y294 204 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 DHRS7Q9Y394 339 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 V9GYY5 206 aaPredicted RBP19.03■□□□□ 0.64
CLN3-225ENST00000566824 FRYQ5TBA9 3013 aa19.03■□□□□ 0.64
CLN3-225ENST00000566824 IGHV5-10-1A0A0J9YXX1 117 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 MCM3P25205 808 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 GPLD1P80108 840 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 SHC2P98077 582 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 PLOD1Q02809 727 aaPredicted RBP19.02■□□□□ 0.64
CLN3-225ENST00000566824 ZFP36L1Q07352 338 aaKnown RBP19.02■□□□□ 0.64
CLN3-225ENST00000566824 GRB7Q14451 532 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 KRT33BQ14525 404 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 CCSMST1Q4G0I0 132 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 HECTD2Q5U5R9 776 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 SLC26A11Q86WA9 606 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 RBM12BQ8IXT5 1001 aaKnown RBP19.02■□□□□ 0.64
CLN3-225ENST00000566824 CPNE9Q8IYJ1 553 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 OR52E1Q8NGJ3 308 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 WDR48Q8TAF3 677 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 AHCYL2Q96HN2 611 aaKnown RBP19.02■□□□□ 0.64
CLN3-225ENST00000566824 DEPDC7Q96QD5 511 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 MTO1Q9Y2Z2 717 aaKnown RBP19.02■□□□□ 0.64
CLN3-225ENST00000566824 NEUROG3Q9Y4Z2 214 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 HEBP2Q9Y5Z4 205 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 COMMD10Q9Y6G5 202 aa19.02■□□□□ 0.64
CLN3-225ENST00000566824 SNRNP200O75643 2136 aaKnown RBP19.02■□□□□ 0.64
CLN3-225ENST00000566824 ANKRD12Q6UB98 2062 aa19.02■□□□□ 0.63
CLN3-225ENST00000566824 KPNA5O15131 536 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 DUX1O43812 170 aa19.01■□□□□ 0.63
CLN3-225ENST00000566824 SLU7O95391 586 aaKnown RBP19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms