RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PVRP15151 417 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 CYP2A7P20853 494 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 CDKN1CP49918 316 aaPredicted RBP16.37■□□□□ 0.21
CLN3-211ENST00000564091 SPARCL1Q14515 664 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 INPP5JQ15735 1006 aaPredicted RBP16.37■□□□□ 0.21
CLN3-211ENST00000564091 ANKRD20A2Q5SQ80 823 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 ANKRD20A1Q5TYW2 823 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 ANKRD20A3Q5VUR7 823 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 SYTL1Q8IYJ3 562 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 NXPE1Q8N323 547 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 ZBTB2Q8N680 514 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 ULK4Q96C45 1275 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 COPS8Q99627 209 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 FAM118BQ9BPY3 351 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 XKR8Q9H6D3 395 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 COG4Q9H9E3 785 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 ZNF451Q9Y4E5 1061 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 CFAP99D6REC4 459 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 MATN2O00339 956 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 SEMA7AO75326 666 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 CRTAMO95727 393 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 PRSS56P0CW18 603 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 RNF224P0DH78 156 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 ITGALP20701 1170 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 PDHA2P29803 388 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 ZNF140P52738 457 aaPredicted RBP16.36■□□□□ 0.21
CLN3-211ENST00000564091 OTUD4Q01804 1114 aaKnown RBP16.36■□□□□ 0.21
CLN3-211ENST00000564091 PRKG2Q13237 762 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 RAPSNQ13702 412 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 PRPSAP1Q14558 356 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 DENND5AQ6IQ26 1287 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 FAM198BQ6UWH4 519 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 SNX20Q7Z614 316 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 CNGA4Q8IV77 575 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 RNF214Q8ND24 703 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 OR52E1Q8NGJ3 308 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 CCDC110Q8TBZ0 833 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 ACTL9Q8TC94 416 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 TRAPPC9Q96Q05 1148 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 NUDT9Q9BW91 350 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 OR52A5Q9H2C5 316 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 PLEKHB1Q9UF11 243 aaPredicted RBP16.36■□□□□ 0.21
CLN3-211ENST00000564091 SERTAD3Q9UJW9 196 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 AAR2Q9Y312 384 aaKnown RBP16.36■□□□□ 0.21
CLN3-211ENST00000564091 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.36■□□□□ 0.21
CLN3-211ENST00000564091 UNC79Q9P2D8 2635 aa16.36■□□□□ 0.21
CLN3-211ENST00000564091 PRRC2CQ9Y520 2896 aaKnown RBP16.36■□□□□ 0.21
CLN3-211ENST00000564091 C17orf113A0A1B0GUU1 675 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 KCNN4O15554 427 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 ATXN8OSP0DMR3 200 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 MC4RP32245 332 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 VAV2P52735 878 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 TBX2Q13207 712 aaPredicted RBP16.35■□□□□ 0.21
CLN3-211ENST00000564091 ZNF658BQ4V348 819 aaPredicted RBP16.35■□□□□ 0.21
CLN3-211ENST00000564091 JMJD6Q6NYC1 403 aaPredicted RBP16.35■□□□□ 0.21
CLN3-211ENST00000564091 CDKL3Q8IVW4 592 aaPredicted RBP16.35■□□□□ 0.21
CLN3-211ENST00000564091 Q8NA96 180 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 DNAJC1Q96KC8 554 aaKnown RBP16.35■□□□□ 0.21
CLN3-211ENST00000564091 HGH1Q9BTY7 390 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 PITPNM3Q9BZ71 974 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 SLC7A5P2Q9GIP4 190 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 SYTL2Q9HCH5 934 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 ZDHHC3Q9NYG2 299 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 PCDHA13Q9Y5I0 950 aa16.35■□□□□ 0.21
CLN3-211ENST00000564091 ICE1Q9Y2F5 2266 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 TCP11X1B4DZS4 312 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 E7EQ34 232 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 IFRD1O00458 451 aaPredicted RBP16.34■□□□□ 0.21
CLN3-211ENST00000564091 ZNF749O43361 778 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 RBP3P10745 1247 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 EIF3EP60228 445 aaKnown RBP16.34■□□□□ 0.21
CLN3-211ENST00000564091 MRPL49Q13405 166 aaKnown RBP16.34■□□□□ 0.21
CLN3-211ENST00000564091 ATP1A4Q13733 1029 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 NCF4Q15080 339 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 EIF2S3LQ2VIR3 472 aaKnown RBP16.34■□□□□ 0.21
CLN3-211ENST00000564091 ZRANB3Q5FWF4 1079 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 C11orf63Q6NUN7 778 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 DARS2Q6PI48 645 aaKnown RBP16.34■□□□□ 0.21
CLN3-211ENST00000564091 CDHR3Q6ZTQ4 885 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 SERPINA9Q86WD7 417 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 AMIGO1Q86WK6 493 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 CLDN19Q8N6F1 224 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 RBMXL3Q8N7X1 1067 aaKnown RBP16.34■□□□□ 0.21
CLN3-211ENST00000564091 HEXDCQ8WVB3 486 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 TBL1YQ9BQ87 522 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 FERMT1Q9BQL6 677 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 OSBPL8Q9BZF1 889 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 TFB2MQ9H5Q4 396 aaKnown RBP16.34■□□□□ 0.21
CLN3-211ENST00000564091 SLAMF7Q9NQ25 335 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 ACTR10Q9NZ32 417 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 MAP10Q9P2G4 905 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 PCDHGB7Q9Y5F8 929 aa16.34■□□□□ 0.21
CLN3-211ENST00000564091 MAP3K7O43318 606 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 LDB2O43679 373 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 DPM1O60762 260 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 TPH1P17752 444 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 CTNNA2P26232 953 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 ACRV1P26436 265 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 OTX2P32243 289 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 HADHAP40939 763 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms