RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ART3Q13508 389 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CBFBQ13951 182 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CLCA4Q14CN2 919 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CYTH1Q15438 398 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 FAM83EQ2M2I3 478 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 KRT24Q2M2I5 525 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 SMTNL2Q2TAL5 461 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ANKRD20A4Q4UJ75 823 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ANKRD20A8PQ5CZ79 823 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 BMP2KLQ5H9B9 411 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 EPHA10Q5JZY3 1008 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ANKRD20A2Q5SQ80 823 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ATAD3BQ5T9A4 648 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ARHGAP40Q5TG30 622 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ANKRD20A1Q5TYW2 823 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ARHGEF16Q5VV41 709 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 SUMO4Q6EEV6 95 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 FAM109BQ6ICB4 259 aaPredicted RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 ETFRF1Q6IPR1 90 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ACAD10Q6JQN1 1059 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 C3orf33Q6P1S2 294 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ARMCX2Q7L311 632 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 RRAGAQ7L523 313 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 OVCH2Q7RTZ1 564 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 FAM122BQ7Z309 247 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 MAVSQ7Z434 540 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CAMKMTQ7Z624 323 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 AMIGO2Q86SJ2 522 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ADAMTSL2Q86TH1 951 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CDR2LQ86X02 465 aaPredicted RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 C2CD5Q86YS7 1000 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CPOQ8IVL8 374 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 BANPQ8N9N5 519 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 FSIP1Q8NA03 581 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ATG16L2Q8NAA4 619 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 OR6B3Q8NGW1 331 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 AKR7LQ8NHP1 331 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 FIBINQ8TAL6 211 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PAQR8Q8TEZ7 354 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CPT1BQ92523 772 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 SMG7Q92540 1137 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 PHKBQ93100 1093 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 FAM120BQ96EK7 910 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 C14orf79Q96F83 325 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 PGM2Q96G03 612 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 FAM227BQ96M60 508 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 OR1F2PQ96R84 312 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 P2RX7Q99572 595 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 MESP1Q9BRJ9 268 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 EDEM2Q9BV94 578 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 DPH1Q9BZG8 443 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 THAP2Q9H0W7 228 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 EXO5Q9H790 373 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 SNX15Q9NRS6 342 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 CENPMQ9NSP4 180 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 NRBP2Q9NSY0 501 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 NYAP2Q9P242 653 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 SERTAD3Q9UJW9 196 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 NDRG4Q9ULP0 352 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 SNX7Q9UNH6 387 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 MRPS2Q9Y399 296 aaKnown RBP5.03□□□□□ -1.6
VPS35-205ENST00000563984 PPIL1Q9Y3C6 166 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 SOGA1O94964 1423 aa5.03□□□□□ -1.6
VPS35-205ENST00000563984 ARAP1Q96P48 1450 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 A0A087WWL8 130 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 A0A0J9YVX5 310 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MFSD2BA6NFX1 497 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 RHPN2P1A8MT19 583 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 IQCF5A8MTL0 148 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 ERVV-1B6SEH8 477 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 DNALI1O14645 258 aaPredicted RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 MAP2K7O14733 419 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 EIF3DO15371 548 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS35-205ENST00000563984 MED7O43513 233 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 CHMP2AO43633 222 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 TADA2AO75478 443 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 RHBDL1O75783 438 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 RPP40O75818 363 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 KRT36O76013 467 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 DDNO94850 711 aaPredicted RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 RPP14O95059 124 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 PGLSO95336 258 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 DIRAS3O95661 229 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MLYCDO95822 493 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 FTCDO95954 541 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 LGI1O95970 557 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 ALPPP05187 535 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 TPOP07202 933 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 ALPPL2P10696 532 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MLNP12872 115 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 JUPP14923 745 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 FGFR2P21802 821 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MAPK4P31152 587 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 SLC5A2P31639 672 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 CAPGP40121 348 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 GSTM5P46439 218 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 SERPINB9P50453 376 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 BMXP51813 675 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 METAP1P53582 386 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 PSMD4P55036 377 aaKnown RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms