RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 KMT5CQ86Y97 462 aa13.05□□□□□ -0.32
CLK3-213ENST00000563842 TBC1D21Q8IYX1 336 aa13.05□□□□□ -0.32
CLK3-213ENST00000563842 GABPB2Q8TAK5 448 aaPredicted RBP13.05□□□□□ -0.32
CLK3-213ENST00000563842 GSDMBQ8TAX9 411 aa13.05□□□□□ -0.32
CLK3-213ENST00000563842 LCN9Q8WX39 176 aa13.05□□□□□ -0.32
CLK3-213ENST00000563842 HRASLS2Q9NWW9 162 aa13.05□□□□□ -0.32
CLK3-213ENST00000563842 OCIAD1Q9NX40 245 aa13.05□□□□□ -0.32
CLK3-213ENST00000563842 POLG2Q9UHN1 485 aa13.05□□□□□ -0.32
CLK3-213ENST00000563842 UBA6A0AVT1 1052 aaPredicted RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 OR6C74A6NCV1 312 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 OR5K3A6NET4 321 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 GOLGA8MH3BSY2 632 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 NDC80O14777 642 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 POLR1CO15160 346 aaPredicted RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 RPN2P04844 631 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 OGNP20774 298 aaKnown RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 RPS3P23396 243 aaKnown RBP eCLIP13.04□□□□□ -0.321e-6■■□□□ 12.2
CLK3-213ENST00000563842 CASQ1P31415 396 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 PREPP48147 710 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 LEPRP48357 1165 aaKnown RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 ARL4DP49703 201 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 ATP1A2P50993 1020 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 DR1Q01658 176 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 CLN3Q13286 438 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 THOC5Q13769 683 aaKnown RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 SEMA3AQ14563 771 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 BRD3Q15059 726 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 ANKRD20A4Q4UJ75 823 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 DNTTIP2Q5QJE6 756 aaKnown RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 RNASEH2BQ5TBB1 312 aaKnown RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 CES3Q6UWW8 571 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 FAM92BQ6ZTR7 304 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 MICALCLQ6ZW33 695 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 TMEM135Q86UB9 458 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 KLHL7Q8IXQ5 586 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 LMNTD2Q8IXW0 634 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 BMPERQ8N8U9 685 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 CALML6Q8TD86 181 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 KLHL6Q8WZ60 621 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 ZNF669Q96BR6 464 aaPredicted RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 CCNL2Q96S94 520 aaPredicted RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 TRIT1Q9H3H1 467 aaKnown RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 SRMSQ9H3Y6 488 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 TFB2MQ9H5Q4 396 aaKnown RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 SEMA5BQ9P283 1151 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 MARCH4Q9P2E8 410 aaPredicted RBP13.04□□□□□ -0.32
CLK3-213ENST00000563842 ASF1AQ9Y294 204 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 B3GALT1Q9Y5Z6 326 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 MRFAP1Q9Y605 127 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 MAD1L1Q9Y6D9 718 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 RPS6KL1Q9Y6S9 549 aa13.04□□□□□ -0.32
CLK3-213ENST00000563842 SNRNP200O75643 2136 aaKnown RBP13.03□□□□□ -0.32
CLK3-213ENST00000563842 TLCD2A6NGC4 264 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 MAP3K7O43318 606 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 USP1O94782 785 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 MAGEA3P43357 314 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 ARCN1P48444 511 aaKnown RBP13.03□□□□□ -0.32
CLK3-213ENST00000563842 SEPHS1P49903 392 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 ADARP55265 1226 aaKnown RBP13.03□□□□□ -0.32
CLK3-213ENST00000563842 FOXM1Q08050 763 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 HSPA14Q0VDF9 509 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 IL11RAQ14626 422 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 TYSND1Q2T9J0 566 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 DNAJC21Q5F1R6 531 aaKnown RBP13.03□□□□□ -0.32
CLK3-213ENST00000563842 IZUMO3Q5VZ72 239 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 ANKS6Q68DC2 871 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 NEPROQ6NW34 567 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 GPR155Q7Z3F1 870 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 LDB1Q86U70 411 aaPredicted RBP13.03□□□□□ -0.32
CLK3-213ENST00000563842 BPHLQ86WA6 291 aaPredicted RBP13.03□□□□□ -0.32
CLK3-213ENST00000563842 PHC3Q8NDX5 983 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 OR4E2Q8NGC2 313 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 JPH3Q8WXH2 748 aaPredicted RBP13.03□□□□□ -0.32
CLK3-213ENST00000563842 SIGLEC10Q96LC7 697 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 NAT9Q9BTE0 207 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 P2RY12Q9H244 342 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 INTS10Q9NVR2 710 aaKnown RBP13.03□□□□□ -0.32
CLK3-213ENST00000563842 WDR70Q9NW82 654 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 FOXJ2Q9P0K8 574 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 CELSR3Q9NYQ7 3312 aa13.03□□□□□ -0.32
CLK3-213ENST00000563842 GPC4O75487 556 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 TTC4O95801 387 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 ESR1P03372 595 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 SPTBP11277 2137 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 ITGB6P18564 788 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 NELFEP18615 380 aaKnown RBP13.02□□□□□ -0.33
CLK3-213ENST00000563842 ARNTP27540 789 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 AOAHP28039 575 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 ACADLP28330 430 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 CCR7P32248 378 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 SHMT2P34897 504 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 PTGIRP43119 386 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 EIF3BP55884 814 aaKnown RBP13.02□□□□□ -0.33
CLK3-213ENST00000563842 ETF1P62495 437 aaKnown RBP13.02□□□□□ -0.33
CLK3-213ENST00000563842 CXADRP78310 365 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 ACY1Q03154 408 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 VAC14Q08AM6 782 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 MORF4L2Q15014 288 aa13.02□□□□□ -0.33
CLK3-213ENST00000563842 LONRF1Q17RB8 773 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms