RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 LCN9Q8WX39 176 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 PPM1MQ96MI6 270 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 TWSG1Q9GZX9 223 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 SRMSQ9H3Y6 488 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 ACTL8Q9H568 366 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 CDC14CA4D256 554 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 ERI2A8K979 691 aaKnown RBP16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 MKRN2OSH3BPM6 223 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 QSOX1O00391 747 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 RFPL1O75677 317 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 PDHA2P29803 388 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 PRDX3P30048 256 aaKnown RBP16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 NSG1P42857 185 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 GSDMDP57764 484 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 FOXK1P85037 733 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 GPR19Q15760 415 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 DBN1Q16643 649 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 ZNF449Q6P9G9 518 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 PACS1Q6VY07 963 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 TMEM126BQ8IUX1 230 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 RNF10Q8N5U6 811 aaKnown RBP16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 CLDN19Q8N6F1 224 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 SLC38A9Q8NBW4 561 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 OR52E1Q8NGJ3 308 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 THAP4Q8WY91 577 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 FERD3LQ96RJ6 166 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 TMEM121Q9BTD3 319 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 FRMD8P1Q9BZ68 369 aaPredicted RBP16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 IMPACTQ9P2X3 320 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 RIMKLBQ9ULI2 386 aa16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 PACSIN2Q9UNF0 486 aaPredicted RBP16.72■□□□□ 0.27
VPS9D1-203ENST00000563798 TCRBV7S2A1N4TA0A589 114 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 SLC9B1P1A6NJY1 282 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 BTN3A3O00478 584 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 LIN7AO14910 233 aaPredicted RBP16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 ARHGAP6O43182 974 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 SUN1O94901 812 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 FTCDO95954 541 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 PTMAP06454 111 aaKnown RBP16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 RAB40ALP0C0E4 278 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 PRSS56P0CW18 603 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 CDH3P22223 829 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 RORAP35398 523 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 ARCN1P48444 511 aaKnown RBP16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 RPS15P62841 145 aaKnown RBP16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 KLRB1Q12918 225 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 GPS2Q13227 327 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 SEMA5AQ13591 1074 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 POU6F1Q14863 301 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 ZNF789Q5FWF6 425 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 PLEKHS1Q5SXH7 462 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 FAM199XQ6PEV8 388 aaPredicted RBP16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 FBXO38Q6PIJ6 1188 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 TAS2R42Q7RTR8 314 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 TMEM135Q86UB9 458 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 CPT1BQ92523 772 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 TFGQ92734 400 aaPredicted RBP16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 RUFY1Q96T51 708 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 SOHLH2Q9NX45 425 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 TLK1Q9UKI8 766 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 FARSAQ9Y285 508 aaKnown RBP16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 TP53TG5Q9Y2B4 290 aa16.71■□□□□ 0.27
VPS9D1-203ENST00000563798 A0A0U1RQJ8 604 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 BTN3A1O00481 513 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 KLK3P07288 261 aaPredicted RBP16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 ACADLP28330 430 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 CDC25BP30305 580 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 FOXN2P32314 431 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 OASLQ15646 514 aaKnown RBP16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 AMIGO1Q86WK6 493 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 GAS2L3Q86XJ1 694 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 ADGRF3Q8IZF5 1079 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 DSELQ8IZU8 1212 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 PHC3Q8NDX5 983 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 TRAPPC9Q96Q05 1148 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 RANBP9Q96S59 729 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 TLR10Q9BXR5 811 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 CHRNA10Q9GZZ6 450 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 FANCEQ9HB96 536 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 MAN2B2Q9Y2E5 1009 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 CAPN6Q9Y6Q1 641 aa16.7■□□□□ 0.26
VPS9D1-203ENST00000563798 C2orf74A8MZ97 194 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 K7EM74 188 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 MEN1O00255 615 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 ST6GAL1P15907 406 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 MSNP26038 577 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 PREPP48147 710 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 PLOD1Q02809 727 aaPredicted RBP16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 ACVR1Q04771 509 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 CDH17Q12864 832 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 ABRQ12979 859 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 MICALCLQ6ZW33 695 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 OR1L3Q8NH93 324 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 ADAMTS17Q8TE56 1095 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 PEX13Q92968 403 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 MR1Q95460 341 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 SGSM3Q96HU1 749 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 ALS2CR12Q96Q35 445 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 DESI2Q9BSY9 194 aa16.69■□□□□ 0.26
VPS9D1-203ENST00000563798 NLNQ9BYT8 704 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms