RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 PAFAH2Q99487 392 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 NRTNQ99748 197 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 CAB39LQ9H9S4 337 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 SLC40A1Q9NP59 571 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 TAS2R13Q9NYV9 303 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 TXNDC16Q9P2K2 825 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 KLHL42Q9P2K6 505 aa21.25■□□□□ 0.99
SNX1-210ENST00000560260 TRMT6Q9UJA5 497 aaKnown RBP21.25■□□□□ 0.99
SNX1-210ENST00000560260 SPTBN4Q9H254 2564 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 HMX2A2RU54 273 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 RHPN2P1A8MT19 583 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 IFRD1O00458 451 aaPredicted RBP21.24■□□□□ 0.99
SNX1-210ENST00000560260 SAT1P21673 171 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 KCNA4P22459 653 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 ATP5DP30049 168 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 CLDN6P56747 220 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 BMPR2Q13873 1038 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 GPR18Q14330 331 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 KLHL38Q2WGJ6 581 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 PAQR3Q6TCH7 311 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 TMEM207Q6UWW9 146 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 TMEM26Q6ZUK4 368 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 SPRED1Q7Z699 444 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 CEP97Q8IW35 865 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 Q8N9G6 341 aaPredicted RBP21.24■□□□□ 0.99
SNX1-210ENST00000560260 OR6C4Q8NGE1 309 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 OR5AR1Q8NGP9 310 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 CAVIN3Q969G5 261 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 TBC1D10AQ9BXI6 508 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 EVA1BQ9NVM1 165 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 PCDHGA1Q9Y5H4 931 aa21.24■□□□□ 0.99
SNX1-210ENST00000560260 B4GAT1O43505 415 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 WISP3O95389 354 aaPredicted RBP21.23■□□□□ 0.99
SNX1-210ENST00000560260 TSPAN12O95859 305 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 SHBGP04278 402 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 GP1BAP07359 652 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 ITGA2BP08514 1039 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 ID4P47928 161 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 OR1D5P58170 312 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 ABRQ12979 859 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 TTLL9Q3SXZ7 439 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 EMBQ6PCB8 327 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 PIWIL4Q7Z3Z4 852 aaKnown RBP21.23■□□□□ 0.99
SNX1-210ENST00000560260 DCAKDQ8WVC6 231 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 UBLCP1Q8WVY7 318 aaPredicted RBP21.23■□□□□ 0.99
SNX1-210ENST00000560260 HGH1Q9BTY7 390 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 DHRS4Q9BTZ2 278 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 SLC39A10Q9ULF5 831 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 ASF1AQ9Y294 204 aa21.23■□□□□ 0.99
SNX1-210ENST00000560260 A0A1W2PQM1 296 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 LILRA5A6NI73 299 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 POC1B-GALNT4F8VUJ3 575 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 PNLIPP16233 465 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 SPRP35270 261 aaPredicted RBP21.22■□□□□ 0.99
SNX1-210ENST00000560260 GMPRP36959 345 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 HSD17B3P37058 310 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 ILKQ13418 452 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 BIRC2Q13490 618 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 PPM1JQ5JR12 505 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 DHRS13Q6UX07 377 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 CYHR1Q6ZMK1 362 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 CFAP61Q8NHU2 1237 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 FERD3LQ96RJ6 166 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 STN1Q9H668 368 aaKnown RBP21.22■□□□□ 0.99
SNX1-210ENST00000560260 UCK1Q9HA47 277 aa21.22■□□□□ 0.99
SNX1-210ENST00000560260 EXOC1LA0A1B0GW35 172 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 KRT87PA6NCN2 255 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 PHGDHO43175 533 aaKnown RBP21.21■□□□□ 0.99
SNX1-210ENST00000560260 TPBGLP0DKB5 382 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 BDKRB1P46663 353 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 CCL7P80098 99 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 POU4F1Q01851 419 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 PDAP1Q13442 181 aaKnown RBP21.21■□□□□ 0.99
SNX1-210ENST00000560260 ZKSCAN8Q15776 578 aaPredicted RBP21.21■□□□□ 0.99
SNX1-210ENST00000560260 UGT3A1Q6NUS8 523 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 CMC1Q7Z7K0 106 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 RASGRP3Q8IV61 690 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 AVL9Q8NBF6 648 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 EEF1AKMT1Q8WVE0 214 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 LINGO1Q96FE5 620 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 SLC38A3Q99624 504 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 KIR3DX1Q9H7L2 352 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 OGFRQ9NZT2 677 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 SLC24A2Q9UI40 661 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 HEBP2Q9Y5Z4 205 aa21.21■□□□□ 0.99
SNX1-210ENST00000560260 IGHV1OR21-1A0A087WYE8 117 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 OPA1O60313 960 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 MATN4O95460 622 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 RPLP0P05388 317 aaKnown RBP21.2■□□□□ 0.98
SNX1-210ENST00000560260 MPC1LP0DKB6 136 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 ENO3P13929 434 aaPredicted RBP21.2■□□□□ 0.98
SNX1-210ENST00000560260 ZNF37AP17032 561 aaPredicted RBP21.2■□□□□ 0.98
SNX1-210ENST00000560260 ALDH4A1P30038 563 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 CSF2RBP32927 897 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 SKIV2L2P42285 1042 aaKnown RBP21.2■□□□□ 0.98
SNX1-210ENST00000560260 GPR3P46089 330 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 INSM1Q01101 510 aaPredicted RBP21.2■□□□□ 0.98
SNX1-210ENST00000560260 PRKG2Q13237 762 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 GRB7Q14451 532 aa21.2■□□□□ 0.98
SNX1-210ENST00000560260 USP10Q14694 798 aaKnown RBP21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms