RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 RANBP10Q6VN20 620 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 SYTL1Q8IYJ3 562 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 RCOR2Q8IZ40 523 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 NXPE1Q8N323 547 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 Q8NA96 180 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 OR4E2Q8NGC2 313 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 OR1L3Q8NH93 324 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 SSC4DQ8WTU2 575 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 CLIP3Q96DZ5 547 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 RBM41Q96IZ5 413 aaKnown RBP12.72□□□□□ -0.37
TPM1-220ENST00000559556 ACTR5Q9H9F9 607 aaPredicted RBP12.72□□□□□ -0.37
TPM1-220ENST00000559556 PCMTD2Q9NV79 361 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 ALG6Q9Y672 507 aa12.72□□□□□ -0.37
TPM1-220ENST00000559556 IGLV3-16A0A075B6K0 115 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 C17orf113A0A1B0GUU1 675 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 TMEM150CB9EJG8 249 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 BTN3A1O00481 513 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 DPM1O60762 260 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 ZRANB2O95218 330 aaKnown RBP eCLIP12.71□□□□□ -0.37
TPM1-220ENST00000559556 LCA5LO95447 670 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 POLBP06746 335 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 ST6GAL1P15907 406 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 CYP2A7P20853 494 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 RBL1P28749 1068 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 PRDX3P30048 256 aaKnown RBP12.71□□□□□ -0.37
TPM1-220ENST00000559556 ITGA1P56199 1179 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 MSLNQ13421 630 aaPredicted RBP12.71□□□□□ -0.37
TPM1-220ENST00000559556 OLIG2Q13516 323 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 GSE1Q14687 1217 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 MED25Q71SY5 747 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 CNGA4Q8IV77 575 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 CCDC50Q8IVM0 306 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 CFAP206Q8IYR0 622 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 TMEM102Q8N9M5 508 aaPredicted RBP12.71□□□□□ -0.37
TPM1-220ENST00000559556 GLIS1Q8NBF1 620 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 FDCSPQ8NFU4 85 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 OR13C4Q8NGS5 318 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 LCN9Q8WX39 176 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 ULK4Q96C45 1275 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 DPH2Q9BQC3 489 aaPredicted RBP12.71□□□□□ -0.37
TPM1-220ENST00000559556 NUDT9Q9BW91 350 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 OR52A5Q9H2C5 316 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 SRMSQ9H3Y6 488 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 COG4Q9H9E3 785 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 CUEDC1Q9NWM3 386 aaPredicted RBP12.71□□□□□ -0.37
TPM1-220ENST00000559556 CRLS1Q9UJA2 301 aa12.71□□□□□ -0.37
TPM1-220ENST00000559556 G3BP2Q9UN86 482 aaKnown RBP12.71□□□□□ -0.37
TPM1-220ENST00000559556 TRBV5-4A0A0C4DH59 114 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 GSAPA4D1B5 854 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 DDX3YO15523 660 aaKnown RBP12.7□□□□□ -0.38
TPM1-220ENST00000559556 SEMA7AO75326 666 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 CRTAMO95727 393 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 ATP1B2P14415 290 aaPredicted RBP12.7□□□□□ -0.38
TPM1-220ENST00000559556 ITGALP20701 1170 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 PSMB4P28070 264 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 HADHAP40939 763 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 PREPP48147 710 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 CD151P48509 253 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 RRADP55042 308 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 KRT33BQ14525 404 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 NCF4Q15080 339 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 INPP5JQ15735 1006 aaPredicted RBP12.7□□□□□ -0.38
TPM1-220ENST00000559556 PRR30Q53SZ7 412 aaPredicted RBP12.7□□□□□ -0.38
TPM1-220ENST00000559556 FAM69BQ5VUD6 431 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 ZNF385CQ66K41 422 aaPredicted RBP12.7□□□□□ -0.38
TPM1-220ENST00000559556 SLC6A19Q695T7 634 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 C11orf63Q6NUN7 778 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 SNX20Q7Z614 316 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 HEXDCQ8WVB3 486 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 PNPLA2Q96AD5 504 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 DCUN1D1Q96GG9 259 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 COPS8Q99627 209 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 SMAD5Q99717 465 aaKnown RBP12.7□□□□□ -0.38
TPM1-220ENST00000559556 APOL2Q9BQE5 337 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 TFB2MQ9H5Q4 396 aaKnown RBP12.7□□□□□ -0.38
TPM1-220ENST00000559556 GPR83Q9NYM4 423 aa12.7□□□□□ -0.38
TPM1-220ENST00000559556 AAR2Q9Y312 384 aaKnown RBP12.7□□□□□ -0.38
TPM1-220ENST00000559556 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.7□□□□□ -0.38
TPM1-220ENST00000559556 SCN3AQ9NY46 2000 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 POLQO75417 2590 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 CCDC66A2RUB6 948 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 CFAP99D6REC4 459 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 H7C0C1 242 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 BTN3A3O00478 584 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 RNF224P0DH78 156 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 VARSP26640 1264 aaKnown RBP12.69□□□□□ -0.38
TPM1-220ENST00000559556 ATP5OP48047 213 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 LMAN1P49257 510 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 COPS2P61201 443 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 OTUD4Q01804 1114 aaKnown RBP12.69□□□□□ -0.38
TPM1-220ENST00000559556 RPA4Q13156 261 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 ATP1A4Q13733 1029 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 PTCHD3Q3KNS1 767 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 GPR33Q49SQ1 333 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 ANKRD20A2Q5SQ80 823 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 ANKRD20A1Q5TYW2 823 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 ANKRD20A3Q5VUR7 823 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 HIST2H2BCQ6DN03 193 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 SARM1Q6SZW1 724 aa12.69□□□□□ -0.38
TPM1-220ENST00000559556 RAB43Q86YS6 212 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms