RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SCNN1AP37088 669 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 DCTP40126 519 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 ALDH7A1P49419 539 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 ZNF280AP59817 542 aaPredicted RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 ARHGEF7Q14155 803 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 SLC39A12Q504Y0 691 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 ZCCHC8Q6NZY4 707 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 C8orf82Q6P1X6 216 aaPredicted RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 LRRTM3Q86VH5 581 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 CYP4Z1Q86W10 505 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 PHYKPLQ8IUZ5 450 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 ZDHHC21Q8IVQ6 265 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 FAM217AQ8IXS0 508 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 DEPDC4Q8N2C3 294 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 CLDN19Q8N6F1 224 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 OR4F6Q8NGB9 312 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 ADAMTS16Q8TE57 1224 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 S100ZQ8WXG8 99 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 SLC10A4Q96EP9 437 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 KCNC2Q96PR1 638 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 TTYH2Q9BSA4 534 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 TRIT1Q9H3H1 467 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 NEK6Q9HC98 313 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 EHD3Q9NZN3 535 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 FKBPLQ9UIM3 349 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 ERVK-11Q9UQG0 969 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 SAMHD1Q9Y3Z3 626 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 ZNF831Q5JPB2 1677 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 VPS26AO75436 327 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 PRSS23O95084 383 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 C1QCP02747 245 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 ENO2P09104 434 aaPredicted RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 UROSP10746 265 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 WARSP23381 471 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 PCSK1P29120 753 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 PHC1P78364 1004 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 ZXDBP98169 803 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 EMX2Q04743 252 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 VASH1Q7L8A9 365 aaPredicted RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 TOP6BLQ8N6T0 577 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 OR7D4Q8NG98 312 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 C17orf50Q8WW18 174 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 SLC13A3Q8WWT9 602 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 CDCA5Q96FF9 252 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 ATOH8Q96SQ7 321 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 NSUN3Q9H649 340 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 GTF2IRD1Q9UHL9 959 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 FBXO10Q9UK96 956 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 INTS6Q9UL03 887 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 TPRKBQ9Y3C4 175 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 KRT87PA6NCN2 255 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 CBX4O00257 560 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 RGS10O43665 173 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 GUCY1B2O75343 617 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 EEDO75530 441 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 CYP11A1P05108 521 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 MMP3P08254 477 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 CTPS1P17812 591 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 S100A1P23297 94 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 LHX1P48742 406 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 IL2P60568 153 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 GRSF1Q12849 480 aaKnown RBP eCLIP11.14□□□□□ -0.63
LDLR-208ENST00000558518 INTS6LQ5JSJ4 861 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 STEAP3Q658P3 488 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 LINGO4Q6UY18 593 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 Q6ZSR9 355 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 USP51Q70EK9 711 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 RTL3Q8N8U3 475 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 PPTC7Q8NI37 304 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 KCTD13Q8WZ19 329 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 FUBP1Q96AE4 644 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 DUS3LQ96G46 650 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 CDKN2AIPNLQ96HQ2 116 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 NECTIN4Q96NY8 510 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 DPH2Q9BQC3 489 aaPredicted RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 TSEN34Q9BSV6 310 aaKnown RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 WWOXQ9NZC7 414 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 TBC1D14Q9P2M4 693 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 MIA3Q5JRA6 1907 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 A0A0D9SEW6 157 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 SLC12A8A0AV02 714 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 UPK1AO00322 258 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 PER2O15055 1255 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 LDB2O43679 373 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 CNMDO75829 334 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 APOA1P02647 267 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 DNAJB2P25686 324 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 HTR1EP28566 365 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 MZF1P28698 734 aaPredicted RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 HCAR3P49019 387 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 SCAPQ12770 1279 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 CBLBQ13191 982 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 CCDC85BQ15834 202 aaPredicted RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 PTRHD1Q6GMV3 140 aaKnown RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 PM20D1Q6GTS8 502 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 PSAPL1Q6NUJ1 521 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 KDELC1Q6UW63 502 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 CCBE1Q6UXH8 406 aaPredicted RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 ZNF621Q6ZSS3 439 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 SPATA19Q7Z5L4 167 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms