RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 THOC5Q13769 683 aaKnown RBP8.47□□□□□ -1.05
USP3-208ENST00000558285 IL11RAQ14626 422 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 SNCBQ16143 134 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 RPE65Q16518 533 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 CYP1B1Q16678 543 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 SNAP47Q5SQN1 464 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 MANEAQ5SRI9 462 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 PTRHD1Q6GMV3 140 aaKnown RBP8.47□□□□□ -1.05
USP3-208ENST00000558285 GPR155Q7Z3F1 870 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 MARCH9Q86YJ5 346 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 SLC35F6Q8N357 371 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 BBOF1Q8ND07 529 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 MCUQ8NE86 351 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 ACVR1CQ8NER5 493 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 BCAS4Q8TDM0 211 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 COG1Q8WTW3 980 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 ELMO1Q92556 727 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 HDAC10Q969S8 669 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 RSRC1Q96IZ7 334 aaKnown RBP8.47□□□□□ -1.05
USP3-208ENST00000558285 NUDT22Q9BRQ3 303 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 COG4Q9H9E3 785 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 PDE7BQ9NP56 450 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 ASCL3Q9NQ33 180 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 PDP2Q9P2J9 529 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 ASIC3Q9UHC3 531 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 SAR1BQ9Y6B6 198 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 CHD8Q9HCK8 2581 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 CCDC162PA2VCL2 907 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 EFCAB7A8K855 629 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 PRMT5O14744 637 aaPredicted RBP8.46□□□□□ -1.05
USP3-208ENST00000558285 POLR1CO15160 346 aaPredicted RBP8.46□□□□□ -1.05
USP3-208ENST00000558285 CAPNS1P04632 268 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 POLBP06746 335 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 SLC19A1P41440 591 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 CTSCP53634 463 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 CLNS1AP54105 237 aaKnown RBP8.46□□□□□ -1.05
USP3-208ENST00000558285 MC1RQ01726 317 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 RHDQ02161 417 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 ACVR1Q04771 509 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 ACTN3Q08043 901 aaPredicted RBP8.46□□□□□ -1.05
USP3-208ENST00000558285 GPR18Q14330 331 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 NFE2L1Q14494 772 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 PTPRCAPQ14761 206 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 NAA25Q14CX7 972 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 NKAIN2Q5VXU1 208 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 IRGCQ6NXR0 463 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 XKR5Q6UX68 686 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 CCDC81Q6ZN84 652 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 PRSS42Q7Z5A4 293 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 C11orf96Q7Z7L8 435 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 B3GNT8Q7Z7M8 397 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 SPACA3Q8IXA5 215 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 PPIL6Q8IXY8 311 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 PRELID2Q8N945 189 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 OR8K5Q8NH50 307 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 LCN9Q8WX39 176 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 USP7Q93009 1102 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 FCRL4Q96PJ5 515 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 FERD3LQ96RJ6 166 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 CCNL2Q96S94 520 aaPredicted RBP8.46□□□□□ -1.05
USP3-208ENST00000558285 SH3GL2Q99962 352 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 RAB11FIP5Q9BXF6 653 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 AP1M1Q9BXS5 423 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 WWP1Q9H0M0 922 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 SEMA6CQ9H3T2 930 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 SRMSQ9H3Y6 488 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 FAM96AQ9H5X1 160 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 KIR3DX1Q9H7L2 352 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 FBXO8Q9NRD0 319 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 ZNF624Q9P2J8 865 aaPredicted RBP8.46□□□□□ -1.05
USP3-208ENST00000558285 FAM8A1Q9UBU6 413 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 SLC23A2Q9UGH3 650 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 PSMD13Q9UNM6 376 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 KCTD3Q9Y597 815 aa8.46□□□□□ -1.05
USP3-208ENST00000558285 PABPN1LA6NDY0 278 aaKnown RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 TLCD2A6NGC4 264 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 OR52A4PA6NMU1 304 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 GAPDHSO14556 408 aaPredicted RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 CD3EAPO15446 510 aaKnown RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 TTC4O95801 387 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 GOT2P00505 430 aaKnown RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 OGNP20774 298 aaKnown RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 MAP4P27816 1152 aaKnown RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 SHMT2P34897 504 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 MAGEA6P43360 314 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 VPS41P49754 854 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 PDX1P52945 283 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 VSNL1P62760 191 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 MSLNQ13421 630 aaPredicted RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 OLIG2Q13516 323 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 SIX1Q15475 284 aaPredicted RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 DBN1Q16643 649 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 TTLL9Q3SXZ7 439 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 KHDC1Q4VXA5 237 aaKnown RBP8.46□□□□□ -1.06
USP3-208ENST00000558285 CCDC38Q502W7 563 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 CACHD1Q5VU97 1274 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 TLDC1Q6P9B6 456 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 PDZD3Q86UT5 571 aa8.46□□□□□ -1.06
USP3-208ENST00000558285 IL22RA1Q8N6P7 574 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms