RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 F8W810 466 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 OR7A17O14581 309 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 XPNPEP2O43895 674 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 ZNF623O75123 536 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 ANGPTL1O95841 491 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 OTCP00480 354 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 RETP07949 1114 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 MC4RP32245 332 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 GPR15P49685 360 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 RPL38P63173 70 aaKnown RBP17.24■□□□□ 0.35
SYNE3-202ENST00000553340 PURAQ00577 322 aaKnown RBP17.24■□□□□ 0.35
SYNE3-202ENST00000553340 GTF2H2Q13888 395 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 PTGR1Q14914 329 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 PON2Q15165 354 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 INAQ16352 499 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 GTF2H2CQ6P1K8 395 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 HIPK1Q86Z02 1210 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 CNIH3Q8TBE1 160 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 MCOLN3Q8TDD5 553 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 FBXO8Q9NRD0 319 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 DCAF13Q9NV06 445 aaKnown RBP17.24■□□□□ 0.35
SYNE3-202ENST00000553340 MARCH2Q9P0N8 246 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 COMMD10Q9Y6G5 202 aa17.24■□□□□ 0.35
SYNE3-202ENST00000553340 M0QX08 132 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 LPOP22079 712 aaPredicted RBP17.23■□□□□ 0.35
SYNE3-202ENST00000553340 FAM110CQ1W6H9 321 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 ADPRMQ3LIE5 342 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 PAGE2BQ5JRK9 111 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 ADCK1Q86TW2 530 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 MICU2Q8IYU8 434 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 SETD9Q8NE22 299 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 FBLIM1Q8WUP2 373 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 BRI3BPQ8WY22 251 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 INTS6Q9UL03 887 aaKnown RBP17.23■□□□□ 0.35
SYNE3-202ENST00000553340 AXIN1O15169 862 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 MAN1A2O60476 641 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 S100BP04271 92 aaPredicted RBP17.23■□□□□ 0.35
SYNE3-202ENST00000553340 TGM1P22735 817 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 CLCN4P51793 760 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 IFITM3Q01628 133 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 VAC14Q08AM6 782 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 C18orf21Q32NC0 220 aaPredicted RBP17.23■□□□□ 0.35
SYNE3-202ENST00000553340 ZRANB3Q5FWF4 1079 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 AGAP7PQ5VUJ5 663 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 DNAJC14Q6Y2X3 702 aaPredicted RBP17.23■□□□□ 0.35
SYNE3-202ENST00000553340 LRRC8DQ7L1W4 858 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 MILR1Q7Z6M3 343 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 GPR149Q86SP6 731 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 CHCHD4Q8N4Q1 142 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 NDNFQ8TB73 568 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 DPY30Q9C005 99 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 IPPKQ9H8X2 491 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 CPA4Q9UI42 421 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 TMEFF2Q9UIK5 374 aaPredicted RBP17.23■□□□□ 0.35
SYNE3-202ENST00000553340 FKBPLQ9UIM3 349 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 FNDC3AQ9Y2H6 1198 aaKnown RBP17.23■□□□□ 0.35
SYNE3-202ENST00000553340 ACTL7AQ9Y615 435 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 U3KQV3 271 aa17.23■□□□□ 0.35
SYNE3-202ENST00000553340 TDRD15B5MCY1 1934 aaKnown RBP17.23■□□□□ 0.35
SYNE3-202ENST00000553340 SLC12A8A0AV02 714 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 CREG1O75629 220 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 FTH1P02794 183 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 IL6P05231 212 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 HOXB6P17509 224 aaKnown RBP17.22■□□□□ 0.35
SYNE3-202ENST00000553340 PSMA3P25788 255 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 MAD2L1Q13257 205 aaPredicted RBP17.22■□□□□ 0.35
SYNE3-202ENST00000553340 RAPSNQ13702 412 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 CCDC92Q53HC0 331 aaPredicted RBP17.22■□□□□ 0.35
SYNE3-202ENST00000553340 RUNDC3AQ59EK9 446 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 GALNT13Q8IUC8 556 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 SNX29P2Q8IUI4 249 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 MFSD4AQ8N468 514 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 GLB1L3Q8NCI6 653 aaPredicted RBP17.22■□□□□ 0.35
SYNE3-202ENST00000553340 C8orf48Q96LL4 319 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 CINPQ9BW66 212 aaPredicted RBP17.22■□□□□ 0.35
SYNE3-202ENST00000553340 SLC25A37Q9NYZ2 338 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 FLRT1Q9NZU1 646 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 ZMYM5Q9UJ78 669 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 PCDHB8Q9UN66 801 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 TPRKBQ9Y3C4 175 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 ARIH1Q9Y4X5 557 aaPredicted RBP17.22■□□□□ 0.35
SYNE3-202ENST00000553340 A0A0D9SEW6 157 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 RGS14O43566 566 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 PGRP06401 933 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 ITGAMP11215 1152 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 NRIP1P48552 1158 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 LSM3P62310 102 aaKnown RBP17.22■□□□□ 0.35
SYNE3-202ENST00000553340 C10orf120Q5SQS8 335 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 TMEM53Q6P2H8 277 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 GCNT7Q6ZNI0 430 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 NEK10Q6ZWH5 1172 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 P2RY8Q86VZ1 359 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 MSRB3Q8IXL7 192 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 SCAIQ8N9R8 606 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 MYEOVQ96EZ4 313 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 PSKH2Q96QS6 385 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 ZBED2Q9BTP6 218 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 OLA1Q9NTK5 396 aaKnown RBP17.22■□□□□ 0.35
SYNE3-202ENST00000553340 ERVK-18Q9QC07 812 aa17.22■□□□□ 0.35
SYNE3-202ENST00000553340 INSIG1O15503 277 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms