RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 GRB7Q14451 532 aa16■□□□□ 0.15
CUX1-213ENST00000549414 HERC3Q15034 1050 aa16■□□□□ 0.15
CUX1-213ENST00000549414 DEF8Q6ZN54 512 aa16■□□□□ 0.15
CUX1-213ENST00000549414 KRT73Q86Y46 540 aa16■□□□□ 0.15
CUX1-213ENST00000549414 ANKRD49Q8WVL7 239 aa16■□□□□ 0.15
CUX1-213ENST00000549414 SCAMP4Q969E2 229 aa16■□□□□ 0.15
CUX1-213ENST00000549414 ZIC5Q96T25 663 aa16■□□□□ 0.15
CUX1-213ENST00000549414 FAM234BA2RU67 622 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 ARPC2O15144 300 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 SOD2P04179 222 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 DHRS4L1P0CG22 281 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 ADARP55265 1226 aaKnown RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 NCF4Q15080 339 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 CST9Q5W186 159 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 TRIM40Q6P9F5 258 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 OR8H2Q8N162 312 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 VANGL1Q8TAA9 524 aaPredicted RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 KHSRPQ92945 711 aaKnown RBP eCLIP15.99■□□□□ 0.153e-6■■■■□ 19.9
CUX1-213ENST00000549414 PDP1Q9P0J1 537 aaPredicted RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 OGDHLQ9ULD0 1010 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 M0QZQ0 153 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 AHCYL1O43865 530 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 THRBP10828 461 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 KRT20P35900 424 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 C1DQ13901 141 aaKnown RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 GPR33Q49SQ1 333 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 GPAT3Q53EU6 434 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 ZDHHC20Q5W0Z9 365 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 GDPD4Q6W3E5 623 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 Q6ZVL8 140 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 ASRGL1Q7L266 308 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 CHST15Q7LFX5 561 aaPredicted RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 MRPL10Q7Z7H8 261 aaKnown RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 OR7A2PQ8NGA2 310 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 TSEN34Q9BSV6 310 aaKnown RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 C11orf84Q9BUA3 381 aaPredicted RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 EQTNQ9NQ60 294 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 ZDHHC3Q9NYG2 299 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 OR10H3O60404 316 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 SNNO75324 88 aaPredicted RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 SORBS2O94875 1100 aaKnown RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 SLC7A1P30825 629 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 CDH15P55291 814 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 SEC13P55735 322 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 ITGADQ13349 1161 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 LY6G5CQ5SRR4 150 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 CCNYL2Q5T2Q4 361 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 CNKSR3Q6P9H4 555 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 PAGE2Q7Z2X7 111 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 DCAF4L2Q8NA75 395 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 XAGE5Q8WWM1 108 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 EXOSC8Q96B26 276 aaKnown RBP15.99■□□□□ 0.15
CUX1-213ENST00000549414 SMIM14Q96QK8 99 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 FEM1AQ9BSK4 669 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 DERL2Q9GZP9 239 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 DAPK2Q9UIK4 370 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 ANGPT4Q9Y264 503 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 INSL6Q9Y581 213 aa15.99■□□□□ 0.15
CUX1-213ENST00000549414 A0A088AWK7 358 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 SLC22A2O15244 555 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 FGF18O76093 207 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 NFATC1O95644 943 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 RING1Q06587 406 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 OR14C36Q8NHC7 312 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 NSMCE3Q96MG7 304 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 PLEKHG4BQ96PX9 1271 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 DHRS4Q9BTZ2 278 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 NLE1Q9NVX2 485 aaPredicted RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 OSER1Q9NX31 292 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 CXCR6O00574 342 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 SLC31A1O15431 190 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 CYP11A1P05108 521 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 IMPDH2P12268 514 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 TEAD2Q15562 447 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 SF1Q15637 639 aaKnown RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 SLC44A4Q53GD3 710 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 SMYD5Q6GMV2 418 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.98■□□□□ 0.151e-8■■■■□ 26.3
CUX1-213ENST00000549414 GOLGA7Q7Z5G4 137 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 VMP1Q96GC9 406 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 RAD21L1Q9H4I0 556 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 GSAPA4D1B5 854 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 SOX6P35712 828 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 BUD31P41223 144 aaPredicted RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 MYLK3Q32MK0 819 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 EIF3MQ7L2H7 374 aaKnown RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 R3HCC1LQ7Z5L2 792 aaKnown RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 LRRC3Q9BY71 257 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 MRM3Q9HC36 420 aaKnown RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 B4GALT6Q9UBX8 382 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 SAMD4AQ9UPU9 718 aaKnown RBP15.98■□□□□ 0.15
CUX1-213ENST00000549414 RNF11Q9Y3C5 154 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 ASB3Q9Y575 518 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 SNTNA6NMZ2 147 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 G3V2L1 256 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 CD1DP15813 335 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 NOS3P29474 1203 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 PTCHD3Q3KNS1 767 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 PLEKHG6Q3KR16 790 aa15.98■□□□□ 0.15
CUX1-213ENST00000549414 ANXA8L1Q5VT79 327 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms