RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 MBLAC2Q68D91 279 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 RAB43Q86YS6 212 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 DUSP26Q9BV47 211 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 CCL22O00626 93 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 AIREO43918 545 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 EIPR1Q53HC9 387 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 TXNRD3NBQ6F5E7 133 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 NAT16Q8N8M0 369 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.32□□□□□ -0.44
COL4A6-209ENST00000545689 TRPV1Q8NER1 839 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 LRRC58Q96CX6 371 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 SPACA7Q96KW9 195 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 DERL2Q9GZP9 239 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 LRRC14BA6NHZ5 514 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 TMEM88BA6NKF7 163 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 RIIAD1A6NNX1 92 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 CCL16O15467 120 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 ZBTB11O95625 1053 aaPredicted RBP12.32□□□□□ -0.44
COL4A6-209ENST00000545689 RPLP0P05388 317 aaKnown RBP12.32□□□□□ -0.44
COL4A6-209ENST00000545689 CFHP08603 1231 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 AQP1P29972 269 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 PSMD8P48556 350 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 SP2Q02086 613 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 C5orf22Q49AR2 442 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 EMC10Q5UCC4 262 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 ATG14Q6ZNE5 492 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 JAZF1Q86VZ6 243 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 LMO3Q8TAP4 145 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 KCNN2Q9H2S1 579 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 GPN1Q9HCN4 374 aaPredicted RBP12.32□□□□□ -0.44
COL4A6-209ENST00000545689 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL4A6-209ENST00000545689 SH3GLB1Q9Y371 365 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 FESP07332 822 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 DDX6P26196 483 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL4A6-209ENST00000545689 PLA2G4EQ3MJ16 856 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 KLHL22Q53GT1 634 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 LCN1P1Q5VSP4 162 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 RTL4Q6ZR62 310 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 SAPCD2Q86UD0 394 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 NPY6RQ99463 290 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 ZNF222Q9UK12 451 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 FZD9O00144 591 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 PDPK1O15530 556 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 ECI2O75521 394 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 ECT2LQ008S8 904 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 EGFLAMQ63HQ2 1017 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 RPTNQ6XPR3 784 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 AHSA2Q719I0 299 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 SATL1Q86VE3 508 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 PLEKHO2Q8TD55 490 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 XAGE5Q8WWM1 108 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 ACAT2Q9BWD1 397 aa12.32□□□□□ -0.44
COL4A6-209ENST00000545689 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 PITPNM1O00562 1244 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 NCK1P16333 377 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 ARFIP1P53367 373 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 RGS8P57771 180 aaPredicted RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TNFAIP8L3Q5GJ75 292 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 ZNF311Q5JNZ3 666 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 CFAP206Q8IYR0 622 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 OR10G6Q8NH81 332 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 ZBED6CLQ96FA7 236 aaPredicted RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 EFCAB11Q9BUY7 163 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3DA0A087WVF3 549 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3IA0A087WXS9 549 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3EA0A087X179 549 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3KA0A087X1G2 549 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3FA6NER0 549 aaPredicted RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3LB9A6J9 549 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3HP0C7X1 549 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 LAMP2P13473 410 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 PDCD4Q53EL6 469 aaKnown RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 SPIN4Q56A73 249 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 ADGRF1Q5T601 910 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3GQ6DHY5 549 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3CQ6IPX1 549 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TBC1D3Q8IZP1 549 aaPredicted RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 ITM2CQ9NQX7 267 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 DUS2Q9NX74 493 aaKnown RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 MRPS7Q9Y2R9 242 aaKnown RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 ARHGEF33A8MVX0 844 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 STX16-NPEPL1H3BU86 382 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 STX16O14662 325 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 ARPC2O15144 300 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 SLC22A1O15245 554 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 CHRNA4P43681 627 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 CCT3P49368 545 aaKnown RBP12.31□□□□□ -0.44
COL4A6-209ENST00000545689 NFKB2Q00653 900 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 MVKQ03426 396 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 SCN1BQ07699 218 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 TRIM32Q13049 653 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 CNPY1Q3B7I2 92 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 CDKN2AIPNLQ96HQ2 116 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 CAMK1GQ96NX5 476 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 BCAS3Q9H6U6 928 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 AKTIPQ9H8T0 292 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 ZBTB26Q9HCK0 441 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 LTBP3Q9NS15 1303 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 DLX3O60479 287 aa12.31□□□□□ -0.44
COL4A6-209ENST00000545689 GADD45GO95257 159 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms