RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ARFGAP1Q8N6T3 406 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 KCTD6Q8NC69 237 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 C1orf216Q8TAB5 229 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 FAM174AQ8TBP5 190 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CYGBQ8WWM9 190 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 HDAC10Q969S8 669 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZNF578Q96N58 590 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 VPS35Q96QK1 796 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 EML4Q9HC35 981 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 TLR9Q9NR96 1032 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 RCOR3Q9P2K3 495 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 RAPGEFL1Q9UHV5 662 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 USP22Q9UPT9 525 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ERI2A8K979 691 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 MASP2O00187 686 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 EEF2KO00418 725 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 EI24O14681 340 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 HNRNPDLO14979 420 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 NDUFA2O43678 99 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 THRBP10828 461 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ACADMP11310 421 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 IL1R2P27930 398 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PBX2P40425 430 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PTPN9P43378 593 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 OR3A3P47888 321 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SLC11A1P49279 550 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 LIG4P49917 911 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 TKTL1P51854 596 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZNF143P52747 638 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 GP2P55259 537 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 BCAR1P56945 870 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ELAVL2Q12926 359 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 TNK1Q13470 666 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 FASTKQ14296 549 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 STARD3Q14849 445 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 TM4SF20Q53R12 229 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 C9orf57Q5W0N0 161 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 TXNRD3NBQ6F5E7 133 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 LILRA6Q6PI73 481 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CREB3L2Q70SY1 520 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 OTOP2Q7RTS6 562 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 BTLAQ7Z6A9 289 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 P2RY8Q86VZ1 359 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SLC41A1Q8IVJ1 513 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 TMEM151AQ8N4L1 468 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 TOP6BLQ8N6T0 577 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZFAND1Q8TCF1 268 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZNF516Q92618 1163 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 FBXL20Q96IG2 436 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZBTB45Q96K62 511 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 TSNARE1Q96NA8 513 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZPBPQ9BS86 351 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CRB3Q9BUF7 120 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CHID1Q9BWS9 393 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 C1QTNF1Q9BXJ1 281 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 KLHL11Q9NVR0 708 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MSRAQ9UJ68 235 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SH3BGRL2Q9UJC5 107 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 KLHL21Q9UJP4 597 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 OAZ3Q9UMX2 235 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 AP3M1Q9Y2T2 418 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 HCN4Q9Y3Q4 1203 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SPEF1Q9Y4P9 236 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PEX16Q9Y5Y5 336 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MTCH2Q9Y6C9 303 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 LINC00862A6NCI5 91 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ZSCAN5BA6NJL1 495 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 H0Y626 953 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 H3BMM5 538 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PRPSAP2O60256 369 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ABLIM3O94929 683 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PIGNO95427 931 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ALPLP05186 524 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ITGB1P05556 798 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 POLBP06746 335 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 GSTM1P09488 218 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TMEM11P17152 192 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 WARSP23381 471 aaKnown RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 MPSTP25325 297 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TALDO1P37837 337 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TNFSF9P41273 254 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 NR4A2P43354 598 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ARFIP1P53367 373 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ARSFP54793 590 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 CDH13P55290 713 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 S100A12P80511 92 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 TEKQ02763 1124 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 RELQ04864 619 aaPredicted RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 GPR50Q13585 617 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SLC14A2Q15849 920 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 DUSP6Q16828 381 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 ZNF404Q494X3 552 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PMF1Q6P1K2 205 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 KCTD20Q7Z5Y7 419 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 CCDC117Q8IWD4 279 aaPredicted RBP5.17□□□□□ -1.58
USP28-213ENST00000544967 GALNT12Q8IXK2 581 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 RIMKLAQ8IXN7 391 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SLC38A6Q8IZM9 456 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 PLD5Q8N7P1 536 aa5.17□□□□□ -1.58
USP28-213ENST00000544967 SETD9Q8NE22 299 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms