RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PFKFB4Q16877 469 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 PDSS1Q5T2R2 415 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 PIK3R6Q5UE93 754 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ALKBH2Q6NS38 261 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GTF2H2CQ6P1K8 395 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 CLNKQ7Z7G1 428 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 FAM129CQ86XR2 697 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ARL10Q8N8L6 244 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 NCSTNQ92542 709 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 OTUB2Q96DC9 234 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 LINGO1Q96FE5 620 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 C12orf42Q96LP6 360 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GSDMCQ9BYG8 508 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 DPEP2Q9H4A9 486 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 MAGIXQ9H6Y5 334 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 KLQ9UEF7 1012 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SPATA2Q9UM82 520 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GABRQQ9UN88 632 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SAMHD1Q9Y3Z3 626 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 V9GYQ6 96 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 DDX60Q8IY21 1712 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 IGKV6D-41A0A0C4DH26 115 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 AIREO43918 545 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 APOC1P02654 83 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SPATA31D3P0C874 917 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 PSMA1P25786 263 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 MC4RP32245 332 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RABGGTBP53611 331 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GSCP56915 257 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ZSWIM7Q19AV6 140 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GPAT3Q53EU6 434 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SH3D19Q5HYK7 790 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RPL13AP3Q6NVV1 102 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SPATA31D4Q6ZUB0 917 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 C11orf96Q7Z7L8 435 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ENDOVQ8N8Q3 282 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 KAT5Q92993 513 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 AP2M1Q96CW1 435 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 OSBPL2Q9H1P3 480 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ZDHHC6Q9H6R6 413 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 TMPRSS4Q9NRS4 437 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RASSF1Q9NS23 344 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 PRDM4Q9UKN5 801 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GLYATL1P3A0A0U1RQE8 302 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 PGRMC2O15173 223 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 NR2F1P10589 423 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 IDSP22304 550 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RBM34P42696 430 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 IDH3AP50213 366 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SLC14A2Q15849 920 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GPR33Q49SQ1 333 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 LIN52Q52LA3 116 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 VWA2Q5GFL6 755 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 COQ5Q5HYK3 327 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 QSOX2Q6ZRP7 698 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RASSF6Q6ZTQ3 369 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 HORMAD2Q8N7B1 307 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 CDYL2Q8N8U2 506 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 OR6C4Q8NGE1 309 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GIPC3Q8TF64 312 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SNRNP27Q8WVK2 155 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 PYDC1Q8WXC3 89 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 EDAQ92838 391 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RCN3Q96D15 328 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SH2D3AQ9BRG2 576 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 FBRSL1Q9HCM7 1045 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 THSD1Q9NS62 852 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ZNF358Q9NW07 568 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GTF2IRD1Q9UHL9 959 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RUVBL1Q9Y265 456 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 POLR3HQ9Y535 204 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ALS2Q96Q42 1657 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 A0A1B0GVM2 712 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 TCAF2A6NFQ2 919 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 NT5C1B-RDH14C9J2C7 533 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 TSPAN3O60637 253 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RECQL4O94761 1208 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 AP2A2O94973 939 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RPL38P63173 70 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 OC90Q02509 493 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 BIKQ13323 160 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ORC1Q13415 861 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 UBAP2LQ14157 1087 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 PKDCCQ504Y2 493 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RAET1GQ6H3X3 334 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 FAM131AQ6UXB0 335 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 KRT77Q7Z794 578 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 POC5Q8NA72 575 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 CLIP3Q96DZ5 547 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ART5Q96L15 291 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 BIRC8Q96P09 236 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 R3HDM2Q9Y2K5 976 aaKnown RBP7.7□□□□□ -1.18
VPS13D-211ENST00000543710 ISPDA4D126 451 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 TTLL8A6PVC2 850 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 F8VP50 259 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 TBL1XO60907 577 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 BUD31P41223 144 aaPredicted RBP7.69□□□□□ -1.18
VPS13D-211ENST00000543710 ZNF181Q2M3W8 571 aa7.69□□□□□ -1.18
VPS13D-211ENST00000543710 IFI44LQ53G44 452 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms