RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PGGT1BP53609 377 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 ABRQ12979 859 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 BIRC2Q13490 618 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 PIP4P1Q86T03 277 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 TRIM48Q8IWZ4 208 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 NKAPQ8N5F7 415 aaKnown RBP16.72■□□□□ 0.27
LIG1-204ENST00000542460 OR6C4Q8NGE1 309 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 EEF1AKMT1Q8WVE0 214 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 MTBPQ96DY7 904 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 CNDP2Q96KP4 475 aaKnown RBP16.72■□□□□ 0.27
LIG1-204ENST00000542460 CAMK1GQ96NX5 476 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 CDC6Q99741 560 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 STN1Q9H668 368 aaKnown RBP16.72■□□□□ 0.27
LIG1-204ENST00000542460 CPNE7Q9UBL6 633 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 FTSJ1Q9UET6 329 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 CFAP20Q9Y6A4 193 aaKnown RBP16.72■□□□□ 0.27
LIG1-204ENST00000542460 COLEC10Q9Y6Z7 277 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 LY6G6EA0A0G2JKS1 128 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 TRIM49D1C9J1S8 452 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 RASGRF2O14827 1237 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 PHGDHO43175 533 aaKnown RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 NUDT21O43809 227 aaKnown RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 CDH16O75309 829 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 VIPP01282 170 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 MPC1LP0DKB6 136 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 MTHFD1P11586 935 aaKnown RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 CKMT1AP12532 417 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 H2AFXP16104 143 aaPredicted RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 ZNF37AP17032 561 aaPredicted RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 NDUFS1P28331 727 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 TYK2P29597 1187 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 MAPK9P45984 424 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 SLCO1A2P46721 670 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 SERPINB8P50452 374 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 DUSP3P51452 185 aaPredicted RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 MAZP56270 477 aaKnown RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 UBE2IP63279 158 aaKnown RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 DAB2P98082 770 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 HHEXQ03014 270 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 DNAJC3Q13217 504 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 ZNF460Q14592 562 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 TMEM207Q6UWW9 146 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 CYHR1Q6ZMK1 362 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 RAPH1Q70E73 1250 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 CCDC91Q7Z6B0 441 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 IQCKQ8N0W5 287 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 BAHD1Q8TBE0 780 aaPredicted RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 EPS8L3Q8TE67 593 aaKnown RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 PDLIM5Q96HC4 596 aaKnown RBP16.71■□□□□ 0.27
LIG1-204ENST00000542460 FOPNLQ96NB1 174 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 POT1Q9NUX5 634 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 TBK1Q9UHD2 729 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 ASF1AQ9Y294 204 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 NFS1Q9Y697 457 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 U3KQA8 63 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 PIKFYVEQ9Y2I7 2098 aa16.71■□□□□ 0.27
LIG1-204ENST00000542460 SMIM23A6NLE4 172 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 MATN4O95460 622 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 ALDOAP04075 364 aaKnown RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 GLB1P16278 677 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 CKMT2P17540 419 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 KRT33BQ14525 404 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 UNC5DQ6UXZ4 953 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 CMC1Q7Z7K0 106 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 SPNS2Q8IVW8 549 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 RBM12BQ8IXT5 1001 aaKnown RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 MYO1HQ8N1T3 1032 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 CFAP61Q8NHU2 1237 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 ZFPM2Q8WW38 1151 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 ISL2Q96A47 359 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 SH3KBP1Q96B97 665 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 LINGO1Q96FE5 620 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 FERD3LQ96RJ6 166 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 TMEM109Q9BVC6 243 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 SLC32A1Q9H598 525 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 MVB12BQ9H7P6 319 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 SLC40A1Q9NP59 571 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 SNX15Q9NRS6 342 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 LRIT1Q9P2V4 623 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 TSR3Q9UJK0 312 aaKnown RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 TLK1Q9UKI8 766 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 UQCRHLA0A096LP55 91 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 TLDC2A0PJX2 215 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 EME2A4GXA9 379 aaPredicted RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 SLC30A4O14863 429 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 PPM1DO15297 605 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 WISP3O95389 354 aaPredicted RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 TSPAN12O95859 305 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 RPN2P04844 631 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 UQCRHP07919 91 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 MYF5P13349 255 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 SLC26A3P40879 764 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 CSRP3P50461 194 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 RSPO4Q2I0M5 234 aaPredicted RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 TIFABQ6ZNK6 161 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 TBC1D21Q8IYX1 336 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 RIBC1Q8N443 379 aaPredicted RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 PHC3Q8NDX5 983 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 NAT6Q93015 286 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms