RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 UBXN4Q92575 508 aa18.32■□□□□ 0.52
VPS33A-205ENST00000541169 VPS39Q96JC1 886 aa18.32■□□□□ 0.52
VPS33A-205ENST00000541169 RAB33BQ9H082 229 aa18.32■□□□□ 0.52
VPS33A-205ENST00000541169 RHOJQ9H4E5 214 aa18.32■□□□□ 0.52
VPS33A-205ENST00000541169 TRMT6Q9UJA5 497 aaKnown RBP18.32■□□□□ 0.52
VPS33A-205ENST00000541169 CDYLQ9Y232 598 aa18.32■□□□□ 0.52
VPS33A-205ENST00000541169 ASF1AQ9Y294 204 aa18.32■□□□□ 0.52
VPS33A-205ENST00000541169 VWA7Q9Y334 891 aa18.32■□□□□ 0.52
VPS33A-205ENST00000541169 DNAH14Q0VDD8 3507 aa18.32■□□□□ 0.52
VPS33A-205ENST00000541169 MATN2O00339 956 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 JUPP14923 745 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 GABRB3P28472 473 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 GP5P40197 560 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 CCL7P80098 99 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 SHC2P98077 582 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 GPR18Q14330 331 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 BRD3Q15059 726 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 KYNUQ16719 465 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 GRTP1Q5TC63 336 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 CAPN12Q6ZSI9 719 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 LILRA3Q8N6C8 439 aaPredicted RBP18.31■□□□□ 0.52
VPS33A-205ENST00000541169 DCBLD1Q8N8Z6 715 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 Q8N9G6 341 aaPredicted RBP18.31■□□□□ 0.52
VPS33A-205ENST00000541169 FBF1Q8TES7 1133 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 FERD3LQ96RJ6 166 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 TFB2MQ9H5Q4 396 aaKnown RBP18.31■□□□□ 0.52
VPS33A-205ENST00000541169 POPDC3Q9HBV1 291 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 SLC24A2Q9UI40 661 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 RABGEF1Q9UJ41 708 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 NEUROG3Q9Y4Z2 214 aa18.31■□□□□ 0.52
VPS33A-205ENST00000541169 D6RAR5 112 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 B4GAT1O43505 415 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 UBXN7O94888 489 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 MT-CO3P00414 261 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 AMD1P17707 334 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 ITGB6P18564 788 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 CD1CP29017 333 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 SPRP35270 261 aaPredicted RBP18.3■□□□□ 0.52
VPS33A-205ENST00000541169 OR1D5P58170 312 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 POU4F1Q01851 419 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 TRA2AQ13595 282 aaKnown RBP eCLIP18.3■□□□□ 0.52
VPS33A-205ENST00000541169 PLCL1Q15111 1095 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 KBTBD12Q3ZCT8 623 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 HES3Q5TGS1 186 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 CTAGE3PQ8IX95 158 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 RAB42Q8N4Z0 105 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 SPDYE1Q8NFV5 336 aaPredicted RBP18.3■□□□□ 0.52
VPS33A-205ENST00000541169 OR4D9Q8NGE8 314 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 LKAAEAR1Q8TD35 194 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 TSPAN17Q96FV3 270 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 RAB11FIP5Q9BXF6 653 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 STRADBQ9C0K7 418 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 CDC42EP4Q9H3Q1 356 aaKnown RBP18.3■□□□□ 0.52
VPS33A-205ENST00000541169 ACSS3Q9H6R3 686 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 NINJ2Q9NZG7 142 aa18.3■□□□□ 0.52
VPS33A-205ENST00000541169 A0A087WUV0 522 aaPredicted RBP18.29■□□□□ 0.52
VPS33A-205ENST00000541169 A0A1W2PQM1 296 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 TOX3O15405 576 aaPredicted RBP18.29■□□□□ 0.52
VPS33A-205ENST00000541169 MATN4O95460 622 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 ABHD2P08910 425 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 MPC1LP0DKB6 136 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 CCKBRP32239 447 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 SHMT2P34897 504 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 SLC12A2P55011 1212 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 FOXC1Q12948 553 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 EIF3IQ13347 325 aaKnown RBP18.29■□□□□ 0.52
VPS33A-205ENST00000541169 PDAP1Q13442 181 aaKnown RBP18.29■□□□□ 0.52
VPS33A-205ENST00000541169 KLHL38Q2WGJ6 581 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 MAP9Q49MG5 647 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 TMEM71Q6P5X7 295 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 CCDC91Q7Z6B0 441 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 DCUN1D3Q8IWE4 304 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 CARFQ8N187 725 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 GPATCH11Q8N954 259 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 LRRN4CLQ8ND94 238 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 CD200R1Q8TD46 325 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 SKA2Q8WVK7 121 aaPredicted RBP18.29■□□□□ 0.52
VPS33A-205ENST00000541169 ZDHHC12Q96GR4 267 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 GPR21Q99679 349 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 MCMBPQ9BTE3 642 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 SYTL2Q9HCH5 934 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 AKAP7Q9P0M2 348 aaPredicted RBP18.29■□□□□ 0.52
VPS33A-205ENST00000541169 EPHA6Q9UF33 1036 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 IKBKGQ9Y6K9 419 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 RP1P56715 2156 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 ASXL3Q9C0F0 2248 aa18.29■□□□□ 0.52
VPS33A-205ENST00000541169 PROS1P07225 676 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 FDXRP22570 491 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 CAPZBP47756 277 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 PPM1FP49593 454 aaPredicted RBP18.28■□□□□ 0.52
VPS33A-205ENST00000541169 PMS2P54278 862 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 IL2P60568 153 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 HECTD2Q5U5R9 776 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 ARMC6Q6NXE6 501 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 WDR93Q6P2C0 686 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 TAOK1Q7L7X3 1001 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 OOSP2Q86WS3 158 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 CHCHD4Q8N4Q1 142 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 LCN9Q8WX39 176 aa18.28■□□□□ 0.52
VPS33A-205ENST00000541169 ANKRD7Q92527 254 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms