RNA–Protein interactions for RNA: ENST00000539934.5

DDX55-206, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 2,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-206ENST00000539934 CLP1Q92989 425 aaKnown RBP12.4□□□□□ -0.42
DDX55-206ENST00000539934 ART4Q93070 314 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 TMEM246Q9BRR3 403 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 MED10Q9BTT4 135 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 CADM1Q9BY67 442 aaKnown RBP12.4□□□□□ -0.42
DDX55-206ENST00000539934 CAB39LQ9H9S4 337 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 CRTAC1Q9NQ79 661 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 WHRNQ9P202 907 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 PSME2Q9UL46 239 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 DNPEPQ9ULA0 475 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 ZFR2Q9UPR6 939 aaKnown RBP12.4□□□□□ -0.42
DDX55-206ENST00000539934 TRAF6Q9Y4K3 522 aa12.4□□□□□ -0.42
DDX55-206ENST00000539934 TRBV23OR9-2A0A075B6M9 112 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 C3orf70A6NLC5 250 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 DPYSL4O14531 572 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 GABRDO14764 452 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 CST8O60676 142 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 FKBP6O75344 327 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 PPM1BO75688 479 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 ZWINTO95229 277 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 NADKO95544 446 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 LHX1P48742 406 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 GSK3AP49840 483 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 FOXO1Q12778 655 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 KRT73Q86Y46 540 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 RFX6Q8HWS3 928 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 CNTD1Q8N815 330 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 C3orf58Q8NDZ4 430 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 VN1R2Q8NFZ6 395 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 OR52H1Q8NGJ2 320 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 ZNF420Q8TAQ5 688 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 CLEC4CQ8WTT0 213 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 FAM172AQ8WUF8 416 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 LINC01599Q8WXQ3 324 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 USP13Q92995 863 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 HSFY1Q96LI6 401 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 LRRC37BQ96QE4 947 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 PAAF1Q9BRP4 392 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 C12orf49Q9H741 205 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 NUDT15Q9NV35 164 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 NKIRAS2Q9NYR9 191 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 GLTPQ9NZD2 209 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 TIMM13Q9Y5L4 95 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 AP1M2Q9Y6Q5 423 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 A0A0X1KG70 313 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 NCF1BA6NI72 391 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 NCF1CA8MVU1 366 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 LEUTXA8MZ59 168 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 ITIH2P19823 946 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 RAB4AP20338 218 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 SERPINB1P30740 379 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 IRX4P78413 519 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 SIGLEC14Q08ET2 396 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 UPP1Q16831 310 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 CCDC142Q17RM4 750 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 YIF1BQ5BJH7 314 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.39□□□□□ -0.43
DDX55-206ENST00000539934 UGT3A1Q6NUS8 523 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 LETMD1Q6P1Q0 360 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 NLRC3Q7RTR2 1065 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 RTN4RL1Q86UN2 441 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 PIGZQ86VD9 579 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 CMASQ8NFW8 434 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 ST8SIA2Q92186 375 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 ZNF689Q96CS4 500 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 PEBP4Q96S96 227 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 ZNF416Q9BWM5 594 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 DUSP16Q9BY84 665 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 TWSG1Q9GZX9 223 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 RASSF1Q9NS23 344 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 DNMT3BQ9UBC3 853 aaKnown RBP12.39□□□□□ -0.43
DDX55-206ENST00000539934 COPS3Q9UNS2 423 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 DGKBQ9Y6T7 804 aa12.39□□□□□ -0.43
DDX55-206ENST00000539934 CLDN5O00501 218 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 RRP8O43159 456 aaKnown RBP12.38□□□□□ -0.43
DDX55-206ENST00000539934 ULK1O75385 1050 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 B3GAT3O94766 335 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 HOXD4P09016 255 aaPredicted RBP12.38□□□□□ -0.43
DDX55-206ENST00000539934 UGT2B10P36537 528 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 RAB13P51153 203 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 DGKQP52824 942 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 CDH6P55285 790 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 GALEQ14376 348 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 RAB6CQ53S08 254 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 TMEM65Q6PI78 240 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 SLC26A9Q7LBE3 791 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 OR2W6PQ8NHA6 318 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 APBB2Q92870 758 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 DOK1Q99704 481 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 BTBD10Q9BSF8 475 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 RAB6CQ9H0N0 254 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 NPAP1Q9NZP6 1156 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 STOML2Q9UJZ1 356 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 PSMD12O00232 456 aaPredicted RBP12.38□□□□□ -0.43
DDX55-206ENST00000539934 AGTP01019 485 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 TP53P04637 393 aaPredicted RBP12.38□□□□□ -0.43
DDX55-206ENST00000539934 PROS1P07225 676 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 SERPINF2P08697 491 aa12.38□□□□□ -0.43
DDX55-206ENST00000539934 ODC1P11926 461 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms